DRSC/TRiP Functional Genomics Resources

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Protein Alignment CSN5 and stambpb

DIOPT Version :10

Sequence 1:NP_477442.1 Gene:CSN5 / 42000 FlyBaseID:FBgn0027053 Length:327 Species:Drosophila melanogaster
Sequence 2:XP_068079123.1 Gene:stambpb / 641572 ZFINID:ZDB-GENE-051127-31 Length:421 Species:Danio rerio


Alignment Length:183 Identity:39/183 - (21%)
Similarity:67/183 - (36%) Gaps:45/183 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    46 PHFFKDIKISALALLKMVMHARS-GGTLEVMGLMLGKVEDNTMIVMDAFALPVEGTETRVNAQAQ 109
            |.|.:.:|.|.|:...::...|. ....|:.|..|....:||:..::...: :.||..| ||   
Zfish   231 PTFDRSLKPSHLSKTTLIDGLRQIAVPAELCGKFLRLANNNTIRAVETCGI-LCGTLNR-NA--- 290

  Fly   110 AYEYMTAYMEAAKEVGRMEH-------------------AVGWYHSHPGYGCWLSGIDVSTQMLN 155
               :...::...|:.|..::                   .:||.|:||....:||.:|:.|....
Zfish   291 ---FTVTHVVVPKQCGGPDYCDTENEEELFLVQDQYNLITLGWIHTHPTQTAFLSSVDLHTHCSY 352

  Fly   156 QTYQEPFVAIVVDPVRTVSAGKVCLGAFR-----------TYPKGYKPPNEEP 197
            |......:|||..|....:      |.||           ...||:.|..::|
Zfish   353 QMMLPESIAIVCSPKFNQT------GYFRLTDYGMEEISTCAQKGFHPHPKDP 399

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CSN5NP_477442.1 MPN_RPN11_CSN5 41..305 CDD:163700 39/183 (21%)
stambpbXP_068079123.1 USP8_dimer 14..118 CDD:462647
MPN_AMSH_like 251..421 CDD:163697 34/163 (21%)
Blue background indicates that the domain is not in the aligned region.

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