DRSC/TRiP Functional Genomics Resources

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Protein Alignment CSN5 and csn-6

DIOPT Version :9

Sequence 1:NP_477442.1 Gene:CSN5 / 42000 FlyBaseID:FBgn0027053 Length:327 Species:Drosophila melanogaster
Sequence 2:NP_001255725.1 Gene:csn-6 / 178289 WormBaseID:WBGene00000818 Length:431 Species:Caenorhabditis elegans


Alignment Length:139 Identity:31/139 - (22%)
Similarity:61/139 - (43%) Gaps:31/139 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    52 IKISALALLKMVMH-----ARSGGTL-EVMGLMLGKVEDNTMIVMDAFALPVEGTETRVNAQAQA 110
            :.:..|.:::|..|     .:.|.|: :|.|.:||:.....:..:::|.|.:| ||........:
 Worm    14 VLLHPLVIMQMSEHYSRTKVQQGPTVKKVFGAILGRQNGRQVEAINSFVLKME-TEEMAEPVTFS 77

  Fly   111 YEYM----TAYMEAAKEVGRMEHAVGWYHSHPGYGCWLSGIDVSTQMLNQTYQE-PFVAIVVDPV 170
            .|::    ..|:|...|:    ..:|.|       |  :|.|.     |.|.:| |.::.:.:.|
 Worm    78 TEHLLQRADQYLEVFPEL----QVIGLY-------C--AGEDD-----NLTPEEKPLLSKLTNAV 124

  Fly   171 R-TVSAGKV 178
            | :..||::
 Worm   125 RNSEKAGQI 133

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CSN5NP_477442.1 MPN_RPN11_CSN5 41..305 CDD:163700 31/139 (22%)
csn-6NP_001255725.1 MPN 13..269 CDD:387347 31/139 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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