DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG14883 and Gdpd4

DIOPT Version :9

Sequence 1:NP_650547.1 Gene:CG14883 / 41997 FlyBaseID:FBgn0038432 Length:330 Species:Drosophila melanogaster
Sequence 2:XP_006229858.1 Gene:Gdpd4 / 680990 RGDID:1585799 Length:739 Species:Rattus norvegicus


Alignment Length:505 Identity:93/505 - (18%)
Similarity:153/505 - (30%) Gaps:213/505 - (42%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 LLWLALKM-----------IYQLLCCSVSLIFFCFNVF----WLFCNLAI----PWCTLTL---- 47
            |||..:::           :..:||   |.:....|.|    ||...|::    |:..|:|    
  Rat   133 LLWERIELTLHTSHKVFIFLVIILC---SFLLGVLNQFWKDKWLIAGLSLQIFAPFVHLSLITVM 194

  Fly    48 ------LVVCIASKFVKLQRS------PNE--------KRLLSL--------------------- 71
                  |.:|:|....:::|.      .:|        :||.:|                     
  Rat   195 VIISWPLAICMAHLETEVKRRYMMDNYEHEILEKCNVFQRLRALQVTAGLSFLIILLCLYLMPLG 259

  Fly    72 ------LSSPEEWPSYWPIANRAAGFDAPENSKAAIKKCLARG--------YRNV------LLDA 116
                  |......|......:|.|...||||:..:.:|.:..|        |.:|      :.|.
  Rat   260 IYSPCVLKKENLGPKPALFGHRGAPMLAPENTMMSFEKAVEFGVSGLETDIYVSVDHVPFLMHDY 324

  Fly   117 GLTSCGEIVVANP---------------TKINVAQ------PLVELQKLNITEQHPMGSQYEAET 160
            .||....|:...|               :.:|..|      |...::.|:..:|...|:|     
  Rat   325 DLTRTTNIIEVLPSAASNHSSNFNWTFLSSLNAGQWFLKHKPFFGMKPLSEADQKRAGNQ----- 384

  Fly   161 VAPLRQLSDFLEAEAAETTVFL----------RLHDNSARMI---------------------NE 194
              .:.|||:|||....|..:.|          .|.:...|.:                     .|
  Rat   385 --SIPQLSEFLELAKREEKIVLFDLFGPPPGHPLRNTFVRRVVRVILDSKIEQRLIFWLPGFDRE 447

  Fly   195 LQKFMT----------ADESFTQRTIVISR--------SPLAIYQLRKLKPEIICGLWHETYL-S 240
            ..|:|.          :.|..||:.|.|..        |.|..|  :|.|..|...:.:|.:| |
  Rat   448 YVKYMAPGFQHVGRLWSIEELTQKNISIINVDYKRLFYSGLRDY--KKAKIYIHVYVINEPWLFS 510

  Fly   241 LAILKSSTLITS---------------------IYGAIFRNIIAPVIGISVVFLSKDEINFH-IA 283
            ||...:...:|:                     :...:|.::.:.:| |.|:|.      :| :.
  Rat   511 LAWCSNVNSVTTDNIELLSQLSHPLFFMTPGYYLLMWLFLDVASAII-IGVIFC------YHWVK 568

  Fly   284 DL----WRNVGVRPIVYMVNSPNEKRYFQKTMKIQYLTDSLRSEPHLLMK 329
            :|    |...........:|.|.|....|:|             |||..|
  Rat   569 ELRRERWLETTASADFERLNLPTENSEIQRT-------------PHLPSK 605

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG14883NP_650547.1 UgpQ 83..319 CDD:223657 65/346 (19%)
PI-PLCc_GDPD_SF 84..320 CDD:301322 65/346 (19%)
Gdpd4XP_006229858.1 MFS <66..>206 CDD:304372 16/75 (21%)
PI-PLCc_GDPD_SF 253..566 CDD:301322 59/328 (18%)
GDPD 280..527 CDD:281062 52/255 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0584
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.