DRSC/TRiP Functional Genomics Resources

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Protein Alignment ss and hif1al2

DIOPT Version :10

Sequence 1:NP_001163629.2 Gene:ss / 41988 FlyBaseID:FBgn0003513 Length:1015 Species:Drosophila melanogaster
Sequence 2:NP_001012371.3 Gene:hif1al2 / 497283 ZFINID:ZDB-GENE-050211-2 Length:663 Species:Danio rerio


Alignment Length:404 Identity:96/404 - (23%)
Similarity:165/404 - (40%) Gaps:77/404 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 SKRHRE-RLNAELDLLASLLPFEQNILSKLDRLSILRLSVSYLRTKSYFQVVMHKDKEDN-GVLP 96
            |:|.:| :|..|   |.:|||.:.::..:.|:.|::||:::||..:..........|..: ||..
Zfish    46 SRRKKESQLFKE---LTALLPLDLSMDGQRDKASVIRLTIAYLHLRGLLDTTDSLMKRPSPGVSD 107

  Fly    97 HIHAHDGYRTRELGAFEHGLLDGDMFLQALNGFLMILTCEGEVFFATHSIESYLGFHQSDIVHQS 161
            ..|             |..|||     .||.||:::|:..|:|.|||..:.::.|.:|.|::.:|
Zfish   108 KSH-------------ERELLD-----SALGGFVVLLSLNGKVIFATKGLTTHTGINQMDLIGRS 154

  Fly   162 VYELVHSEDREELQRQLLWNSFLPADMSSMQLAETLAPDKA---LYLERSFTVRFRCLLDNTSGF 223
            :.|.:|..|:.|::..|            .:|.....|.|.   |.::::...:.       :|:
Zfish   155 LLEFLHPCDQMEVKDIL------------TRLIGNQEPQKCEVFLRIKKAMNTKL-------TGW 200

  Fly   224 LRLDIRGRIKVLHGQNRKTEEP-PLALFAYCTPFGPPSLLEIPHKEN--MFKSKHKLDFSLVSMD 285
                   :|....|:.|.:..| ...|...|.......:.|:....|  .|.|.|..|.:.....
Zfish   201 -------KIIQCSGKKRSSATPGSSCLVLECRVLPIQEITEVDEALNACTFMSVHSPDMTFTYCH 258

  Fly   286 QRGKHILGYADAELVNMGGYDLVHYDDLAYVASAHQELLKTGASGMIAYRYQKKDGEWQWLQTSS 350
            .|...::|:.|.:|:....|...|..|...:..||..||..|......||...:.|.:.|.:|.:
Zfish   259 SRVVKLIGFRDTDLLGQSVYQYYHPSDCQQIRKAHICLLSKGQVSTGKYRLLHRYGGYVWAETDA 323

  Fly   351 RLVYKNSK---PDFVICTHRQLMDEEGHDLLGKRTMDFKVSYLDTGLASTYFSEADQLVVPPSTS 412
            .||. ||:   |:.|:|.:..|.:.|..:|          .:|        ..:.:||:.|.|:|
Zfish   324 SLVC-NSQTGVPESVVCINYILSEVEQPNL----------PFL--------LEKTEQLLKPTSSS 369

  Fly   413 PTAHALPPPVTPTR 426
            ......|.|..|:|
Zfish   370 YCPETEPAPFPPSR 383

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ssNP_001163629.2 bHLH-PAS_spineless_like 24..87 CDD:381573 15/53 (28%)
PAS 123..178 CDD:214512 18/54 (33%)
PAS_3 282..366 CDD:430001 24/86 (28%)
hif1al2NP_001012371.3 None

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