DRSC/TRiP Functional Genomics Resources

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Protein Alignment ss and cyc

DIOPT Version :10

Sequence 1:NP_001163629.2 Gene:ss / 41988 FlyBaseID:FBgn0003513 Length:1015 Species:Drosophila melanogaster
Sequence 2:NP_524168.2 Gene:cyc / 40162 FlyBaseID:FBgn0023094 Length:413 Species:Drosophila melanogaster


Alignment Length:393 Identity:92/393 - (23%)
Similarity:170/393 - (43%) Gaps:77/393 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 KSNPS---KRHRERLNAELDLLASLLPFEQNILSKLDRLSILRLSVSYLRTKSYFQVVMHKDKED 91
            |.|.|   ||.|:::|..::.|:|::|....:..|||:|::||::|.:||           ....
  Fly    32 KQNHSEIEKRRRDKMNTYINELSSMIPMCFAMQRKLDKLTVLRMAVQHLR-----------GIRG 85

  Fly    92 NGVLPHIHAHDGYRTRELGAFEHGLLDGDMFLQALNGFLMILTCE-GEVFFATHSIESYLGFHQS 155
            :|.|...:..| ||...|...|..::    .|||..|||.::.|: |.:.:.:.|:.|.|...|:
  Fly    86 SGSLHPFNGSD-YRPSFLSDQELKMI----ILQASEGFLFVVGCDRGRILYVSDSVSSVLNSTQA 145

  Fly   156 DIVHQSVYELVHSEDREELQRQLLWNSFLP----ADMSSMQLAETLAPDKALYL----ERSFTVR 212
            |::.||.::::|.:|..:::.||......|    .|..:|...:|..|.....|    .|||..|
  Fly   146 DLLGQSWFDVLHPKDIGKVKEQLSSLEQCPRERLIDAKTMLPVKTDVPQSLCRLCPGARRSFFCR 210

  Fly   213 FRCLL---------DNTSGFLRLDIRGRIKVLHG----------------------QNRKTEEPP 246
            .:...         .:||...|...:.:.::..|                      |:..::|..
  Fly   211 MKLRTASNNQIKEESDTSSSSRSSTKRKSRLTTGHKYRVIQCTGYLKSWTPIKDEDQDADSDEQT 275

  Fly   247 LALFAYCTPFG-----------PPSLLEIPH-KENMFKSKHKLDFSLVSMDQRGKHILGYADAEL 299
            ..| :.....|           |.||...|: :..:|.|:|..:...:.:|||...::|:...|:
  Fly   276 TNL-SCLVAIGRIPPNVRNSTVPASLDNHPNIRHVLFISRHSGEGKFLFIDQRATLVIGFLPQEI 339

  Fly   300 VNMGGYDLVHYDDLAYVASAHQELLKTGASGMI-AYRYQKKDGEWQWLQTSSRLVYKN---SKPD 360
            :....|:..|.:|:|.:..:|:.:::....... .||::.||..:..||:..| .:||   |:.|
  Fly   340 LGTSFYEYFHNEDIAALMESHKMVMQVPEKVTTQVYRFRCKDNSYIQLQSEWR-AFKNPWTSEID 403

  Fly   361 FVI 363
            ::|
  Fly   404 YII 406

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ssNP_001163629.2 bHLH-PAS_spineless_like 24..87 CDD:381573 19/59 (32%)
PAS 123..178 CDD:214512 17/55 (31%)
PAS_3 282..366 CDD:430001 22/86 (26%)
cycNP_524168.2 bHLH_SF 31..92 CDD:469605 21/70 (30%)
PAS 111..173 CDD:214512 19/61 (31%)
PAS_11 311..411 CDD:464214 25/97 (26%)

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