DRSC/TRiP Functional Genomics Resources

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Protein Alignment ss and Bmal1

DIOPT Version :10

Sequence 1:NP_001163629.2 Gene:ss / 41988 FlyBaseID:FBgn0003513 Length:1015 Species:Drosophila melanogaster
Sequence 2:NP_001398905.1 Gene:Bmal1 / 11865 MGIID:1096381 Length:638 Species:Mus musculus


Alignment Length:567 Identity:131/567 - (23%)
Similarity:233/567 - (41%) Gaps:124/567 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 SNPSKRHRERLNAELDLLASLLPFEQNILSKLDRLSILRLSVSYLRTKSYFQVVMHKDKEDNGVL 95
            |...||.|:::|:.:|.||||:|....:..|||:|::||::|.:::|..            ....
Mouse    85 SQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLR------------GATN 137

  Fly    96 PHIHAHDGYRTRELGAFEHGLLDGD----MFLQALNGFLMILTCE-GEVFFATHSIESYLGFHQS 155
            |:..|:          ::...|..|    :.|:|.:|||.::.|: |::.|.:.|:...|.:.|:
Mouse   138 PYTEAN----------YKPTFLSDDELKHLILRAADGFLFVVGCDRGKILFVSESVFKILNYSQN 192

  Fly   156 DIVHQSVYELVHSEDREELQRQLLWNSFLPAD-----MSSMQLAETLAPDKALY---LERSFTVR 212
            |::.||:::.:|.:|..:::.||..:...|.:     .:.:.:...:.|..:..   ..|||..|
Mouse   193 DLIGQSLFDYLHPKDIAKVKEQLSSSDTAPRERLIDAKTGLPVKTDITPGPSRLCSGARRSFFCR 257

  Fly   213 FRCL----------LDNTSGFLRLDIRGRIKVLHGQNRKTEEPPL-------------------- 247
            .:|.          ..:|....:.| |.....:|........||.                    
Mouse   258 MKCNRPSVKVEDKDFASTCSKKKAD-RKSFCTIHSTGYLKSWPPTKMGLDEDNEPDNEGCNLSCL 321

  Fly   248 ----ALFAYCTPFGPPSLLEIPHKENMFKSKHKLDFSLVSMDQRGKHILGYADAELVNMGGYDLV 308
                .|.::..|  .|:..||..|...:.|:|.:|...|.:|||...||.|...||:....|:..
Mouse   322 VAIGRLHSHMVP--QPANGEIRVKSMEYVSRHAIDGKFVFVDQRATAILAYLPQELLGTSCYEYF 384

  Fly   309 HYDDLAYVASAHQELLKTGAS-GMIAYRYQKKDGEWQWLQTSSRLVYKN---SKPDFVICTHRQL 369
            |.||:.::|..|:::|:|... ....|:::.|||.:..|: |....:.|   .:.::::.|:..:
Mouse   385 HQDDIGHLAECHRQVLQTREKITTNCYKFKIKDGSFITLR-SRWFSFMNPWTKEVEYIVSTNTVV 448

  Fly   370 MDE--EGHD------LLGKRTMDFKVSYLDTGLASTYFSEADQLVV--PPSTSPTAHALPPPVTP 424
            :..  ||.|      .....:||   |.|.:|        .|..||  |..|.||...:|   ..
Mouse   449 LANVLEGGDPTFPQLTAPPHSMD---SMLPSG--------EDSFVVGGPKRTHPTVPGIP---GG 499

  Fly   425 TRP-----NRRYKTQLRDF-------LSTCRSKRKLQQQNQPQTQQTSPLGGQV---GSP-APAV 473
            ||.     .|....::.:.       .|:|.|. .|...:.|....:||.|.::   |:| .|:.
Mouse   500 TRAGAGKIGRMIAEEIMEIHRIRGSSPSSCGSS-PLNITSTPPPDASSPGGKKILNGGTPDIPST 563

  Fly   474 AVEYLPDPAAAVAA-AYSNLNPMYTTSPY--ASAADNLYMGSSMPAN 517
            .:  ||..|..... .||:.:.:...:|:  ....|| ..|||.|:|
Mouse   564 GL--LPGQAQETPGYPYSDSSSILGENPHIGIDMIDN-DQGSSSPSN 607

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ssNP_001163629.2 bHLH-PAS_spineless_like 24..87 CDD:381573 19/55 (35%)
PAS 123..178 CDD:214512 16/55 (29%)
PAS_3 282..366 CDD:430001 24/87 (28%)
Bmal1NP_001398905.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..39
Nuclear localization signal. /evidence=ECO:0000269|PubMed:16980631 36..41
bHLH-PAS_ARNTL_PASD3 74..137 CDD:381444 19/63 (30%)
Nuclear export signal 1. /evidence=ECO:0000269|PubMed:16980631 149..159 2/9 (22%)
PAS 156..215 CDD:214512 16/58 (28%)
PAS_11 346..448 CDD:464214 28/102 (27%)
Nuclear export signal 2. /evidence=ECO:0000269|PubMed:16980631 368..376 3/7 (43%)
Interaction with CIART 520..600 19/83 (23%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 523..607 23/87 (26%)
Blue background indicates that the domain is not in the aligned region.

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