DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ss and ahrr

DIOPT Version :9

Sequence 1:NP_001163629.2 Gene:ss / 41988 FlyBaseID:FBgn0003513 Length:1015 Species:Drosophila melanogaster
Sequence 2:XP_017950411.2 Gene:ahrr / 100485488 XenbaseID:XB-GENE-1021819 Length:753 Species:Xenopus tropicalis


Alignment Length:831 Identity:209/831 - (25%)
Similarity:346/831 - (41%) Gaps:182/831 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 VYATKRRRRNGKSLKPPPKDGVTKSNPSKRHRERLNAELDLLASLLPFEQNILSKLDRLSILRLS 71
            :||.::||:..:  |..|..|..|||||||||:|||||||.|||||||...|::|||:|||||||
 Frog     8 MYAGRKRRKPVQ--KQRPSSGSEKSNPSKRHRDRLNAELDRLASLLPFPPEIIAKLDKLSILRLS 70

  Fly    72 VSYLRTKSYFQVV--MHKDKEDNGVLPHIHAHDGYRTRELGAFEHGLLDGDMFLQALNGFLMILT 134
            |||||.||:||.:  .|..|:.:..:.|....|  :|....|    :.:|::.|::||||.::::
 Frog    71 VSYLRVKSFFQAIEEQHSKKQPSQPVGHAIKED--KTSSGTA----MPEGELLLESLNGFALVVS 129

  Fly   135 CEGEVFFATHSIESYLGFHQSDIVHQSVYELVHSEDREELQRQLLWNSFLPADMSSMQLAETLAP 199
            .||.:|:|:.:|..||||||:|::||::|:.:|.:||:|..|||.| :..|..|...|.:.|...
 Frog   130 TEGMIFYASATILDYLGFHQTDVMHQNIYDYIHVDDRQEFSRQLHW-AMNPQQMVLTQESHTDTG 193

  Fly   200 DKAL-------------------YLERSFTVRFRCLLDNTSGFLRLDIRGRIKVLHGQNRKTEE- 244
            :.|.                   :|.|.|..|.|||||:|||||.:...|::|.|.||.:|... 
 Frog   194 EDAFLNKLFEAEESDSSPSAYSSFLNRCFICRVRCLLDSTSGFLTMQFEGKLKFLFGQTKKASSG 258

  Fly   245 ----PPLALFAYCTPFGPPSLLEIPHKENMFKSKHKLDFSLVSMDQRGKHILGYADAELVNMGGY 305
                |.:|||....|...|.:.||..|..:.:::.| ..:..:.:...|...|..:.|......:
 Frog   259 AIHPPQMALFCVAVPLLLPPVNEIKIKSVLLRTQKK-PSATSNSENTAKPFPGTCEVEHAGRNSH 322

  Fly   306 DLVHYDDLAYVASAHQELLKTGASGMIAYRYQKKDGEWQWLQTSSRLVYKNSKPDFVICTHRQLM 370
            ...::.::.:......:|:.:|.:|:..::.:..:.:|.|::.::.|.|:|...|:::...:...
 Frog   323 QGTYFPNILHGPENQIKLMNSGDNGISLFKVRTNEDQWLWVEANTPLRYRNGCSDYIVVPQQSEE 387

  Fly   371 DEEGH----DLLGKRTMDFKVSYLDTGLASTYFSEADQLVVPPSTSPTAHALPPPVTPTRPNRRY 431
            :.:.|    .|.|.|.....|:.:...|                    .|.||       ..::.
 Frog   388 EMKKHGGALGLKGTRETSLGVNDMPALL--------------------KHHLP-------WGKQE 425

  Fly   432 KTQLRDFLSTCRSKRKLQQ-----QNQPQTQQT--SPLGGQVGSPAPAVAVEYLPDPAAAVAAAY 489
            |..::......:....||:     |.|..|.|.  |..|..||.|:..:..:::...:..:...:
 Frog   426 KEDIKVKFQLNKCDPILQEETSFFQKQISTAQNSCSTSGTWVGKPSARINHQFIGSFSDRINRPF 490

  Fly   490 SNLNPMYTTSPYASAADNLYMGSSMPANAFYPVSENLFHQYRLQGAVGGYYTDYP--HSGAPASA 552
            .|::   .:.|........:.|::   ..|.|.|.  |.|:.|.        .||  |      .
 Frog   491 YNMD---QSPPGVHMLGRHHRGNT---EHFQPYSG--FQQHALD--------SYPVEH------I 533

  Fly   553 YVANGFLSYDGYAIASKADEKWQETGKYYSGYSSGYGSPTSTPQQIPLKTPKSS-----PQVMEV 612
            .:.|.|::.:..                   |.||      .|..||:||...|     |::.  
 Frog   534 KLENPFVTPEVL-------------------YDSG------LPLNIPIKTENDSDSEGQPELY-- 571

  Fly   613 ISCSSDGPSPVGGATPNGV-------GSVTPKVELAGTTAAAAAGQDPYERQTVLMWGTTHSSGV 670
                |:..:.......||:       .|:..|.||..:...:......|...:  ..|..::|| 
 Frog   572 ----SECQTHAWLTENNGLKKQLDFSESLHLKTELDFSEQTSCFKPKHYMHSS--HRGHCYASG- 629

  Fly   671 PLNSHGGRTGAGNPAS-----------PQRSTPLGNGLGYASANNNNNDLEPATAAKWNGTKELP 724
               :|.....||.|..           |.:...|.:.|...:|:.:||............|.:  
 Frog   630 ---THMNHFNAGRPFKGIYNKDAGQFCPPKCAYLESVLSLQAADCSNNQFYSVATVDDKNTGD-- 689

  Fly   725 GKSGSASTPESYQMQHDDSGLYSASSHT---------TSPQQQQQQQLQQS 766
                     .||::|.:    :.|.|..         :.|..:.||:..||
 Frog   690 ---------HSYKLQCE----FKAHSLVQNIKREPLDSPPWVESQQEAVQS 727

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ssNP_001163629.2 HLH 35..76 CDD:197674 32/40 (80%)
PAS 123..178 CDD:214512 25/54 (46%)
PAS_3 282..366 CDD:285623 12/83 (14%)
PAS <291..369 CDD:238075 11/77 (14%)
ahrrXP_017950411.2 bHLH-PAS_AhRR 26..85 CDD:381441 44/58 (76%)
PAS 115..178 CDD:214512 28/63 (44%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 85 1.000 Domainoid score I8058
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10649
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
33.010

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