DRSC/TRiP Functional Genomics Resources

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Protein Alignment ss and arnt

DIOPT Version :9

Sequence 1:NP_001163629.2 Gene:ss / 41988 FlyBaseID:FBgn0003513 Length:1015 Species:Drosophila melanogaster
Sequence 2:XP_012825275.1 Gene:arnt / 100144695 XenbaseID:XB-GENE-855450 Length:778 Species:Xenopus tropicalis


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ssNP_001163629.2 HLH 35..76 CDD:197674
PAS 123..178 CDD:214512
PAS_3 282..366 CDD:285623
PAS <291..369 CDD:238075
arntXP_012825275.1 bHLH-PAS_ARNT 79..143 CDD:381517
PAS 156..262 CDD:366402
PAS_11 355..455 CDD:373151
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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