DRSC/TRiP Functional Genomics Resources

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Protein Alignment pad and NUC

DIOPT Version :9

Sequence 1:NP_650534.2 Gene:pad / 41981 FlyBaseID:FBgn0038418 Length:924 Species:Drosophila melanogaster
Sequence 2:NP_199229.1 Gene:NUC / 834439 AraportID:AT5G44160 Length:466 Species:Arabidopsis thaliana


Alignment Length:293 Identity:64/293 - (21%)
Similarity:104/293 - (35%) Gaps:75/293 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   665 PENQDTSGQKVKAARPP----QQILP-SPQQEGQNATHSGSEAPTTSGLICPTCKREFKKKEHLT 724
            |::..|.........||    ::.|| :|..|.:....|.:....|:..:|..|.:.|::.::|.
plant    18 PQSSSTLDHDESLINPPLVKKKRNLPGNPDPEAEVIALSPTTLMATNRFLCEVCGKGFQRDQNLQ 82

  Fly   725 QHVKLH-------------AGLRPFKCSEEGC----------DKTFSRKEHLSRHLVSHSGQKMY 766
            .|.:.|             ...|.:.|.|:.|          |.|..:|....:|     |:|.:
plant    83 LHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHSSRALGDLTGIKKHFCRKH-----GEKKW 142

  Fly   767 TCEVCKKPFSRKDNLNKHRRIHTQTSTETLYCCDVCNKNFATKLHYEKHREMHKKIRPESAAPGA 831
            |||.|.|.::    :....:.|::|.....|.|| |...|:.:..:..||.....:..|:|...|
plant   143 TCEKCAKRYA----VQSDWKAHSKTCGTREYRCD-CGTIFSRRDSFITHRAFCDALAEETAKINA 202

  Fly   832 TA---SPAAAPALTHVRSNGQ------VPNKAVFEIKQERSAQQTQT---------QQPPAQVMH 878
            .:   ..|||.|...|..|.|      :|....|       ..|.||         |.|.:..:.
plant   203 VSHLNGLAAAGAPGSVNLNYQYLMGTFIPPLQPF-------VPQPQTNPNHHHQHFQPPTSSSLS 260

  Fly   879 VVTTQDLA------------GNTITITQAPDSN 899
            :...||:|            ||....:...|:|
plant   261 LWMGQDIAPPQPQPDYDWVFGNAKAASACIDNN 293

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
padNP_650534.2 zf-AD 16..87 CDD:214871
C2H2 Zn finger 710..730 CDD:275368 5/19 (26%)
zf-C2H2 736..760 CDD:278523 7/33 (21%)
C2H2 Zn finger 738..760 CDD:275368 7/31 (23%)
zf-H2C2_2 752..777 CDD:290200 8/24 (33%)
zf-C2H2 766..788 CDD:278523 5/21 (24%)
C2H2 Zn finger 768..788 CDD:275368 4/19 (21%)
zf-H2C2_2 780..808 CDD:290200 7/27 (26%)
C2H2 Zn finger 799..819 CDD:275368 6/19 (32%)
NUCNP_199229.1 C2H2 Zn finger 68..88 CDD:275368 5/19 (26%)
C2H2 Zn finger 109..137 CDD:275368 6/27 (22%)
C2H2 Zn finger 144..163 CDD:275368 5/22 (23%)
C2H2 Zn finger 171..187 CDD:275368 4/16 (25%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 44 1.000 Inparanoid score I2683
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.050

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