DRSC/TRiP Functional Genomics Resources

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Protein Alignment pad and znf438

DIOPT Version :9

Sequence 1:NP_650534.2 Gene:pad / 41981 FlyBaseID:FBgn0038418 Length:924 Species:Drosophila melanogaster
Sequence 2:NP_001070629.1 Gene:znf438 / 798757 ZFINID:ZDB-GENE-060929-868 Length:746 Species:Danio rerio


Alignment Length:687 Identity:153/687 - (22%)
Similarity:241/687 - (35%) Gaps:198/687 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   257 TNQLQATTQYSVAQDDTSSSGDSKKPKLNFVLSSPTAPQFTTSMPQFGGSQPQIQLQLMPGSGGV 321
            |.:.:::...|..|.|..:....|  .|.|...:|.||....|........|    ..:|.:...
Zfish     3 TQEHRSSPLKSHIQSDARTHSQMK--GLQFRSIAPKAPAVVPSSAVLSCQPP----SALPEASTA 61

  Fly   322 TSAGT--VPAQTQLNAAALLSSLAGPQSTTNLLSPNKCFLPITIRDENSDQQIVAHIDTKNLVLP 384
            .|..:  ||||   |.|  |..:||.:.|.:|::     ||     :...||.:    .|||.||
Zfish    62 VSPKSILVPAQ---NYA--LMQVAGQEGTFSLVA-----LP-----QTQQQQPI----QKNLKLP 107

  Fly   385 -TTYQ-VQMKLQPQLATADGQPIMQLTPTSIPATLQLTPQTLGNPGSA--------FQGTTVTQN 439
             ..|| |:.|..|:   ..|..|.  :||.:.||.......|....|:        ...|..:.:
Zfish   108 IPRYQPVRSKSAPE---KGGNKIQ--SPTKVSATTHAQSSILKTEQSSEPLSEQLVLPDTPASSD 167

  Fly   440 QFLAPQQPLTQLPNTAQVTSQ--QIIRSPHTSTTNSQLVIRNVTNIPPTPT---TPTSSKKAPTF 499
            ..:||..|.:.:....:..|.  .:...|:.|.|:   ::.::..|.|..|   .|.|:..|.|.
Zfish   168 ISIAPLLPASHVDQKVEQKSDVGPLRNQPYPSGTS---LVASIKKISPVKTQIECPASAGSAITV 229

  Fly   500 KTPSPKQK-----PMPSPKSKTTVGPSSGGSNGTSTNEFKRLITQTKPQPQVKQQQTAGLSASGA 559
            .:|:...|     |.| ||.|..:                      .|..:||....|..|.:..
Zfish   230 LSPTIFSKAVQIIPSP-PKGKLPI----------------------LPYAKVKNSLLAPTSLAST 271

  Fly   560 PTATSANQAAMQRLSSNTTITKVPKQPASLPAPAPTSNPAKLPMLNKQNITISRISMQTAPKAQS 624
            |            .|...|::.....|.:     ||.|  |:..:|.: :....:|.........
Zfish   272 P------------FSDKQTVSWAKSSPKN-----PTEN--KVKFINNK-VKTESLSQDLNNTQFK 316

  Fly   625 KPSTTSPTPASQPIPVSVPALSQAQPPPLAAQHKKIVRKPPEN-QDTSGQ--------KVKAARP 680
            |||...|....:.:. .:.|....:...|:...:::..|||.. |:::.|        |.::.||
Zfish   317 KPSGKKPGRKRKTMG-DILAFEARKKRSLSFFRRRVPEKPPPGVQNSASQQKFLDISKKYRSIRP 380

  Fly   681 ----------PQQI-LPS------PQQE---GQNATHSGSEAP---------------TTSGLI- 709
                      ||.: |||      |.|:   ||..:.....||               ..||:| 
Zfish   381 KPVLVMEATIPQLVPLPSMSASDNPDQDLLAGQQISGKTLSAPQSSQATDRQPVLNCKVNSGVIY 445

  Fly   710 --------CPTCKREFKKKEHLTQHVKLHAGLRPFKCSEEGCDKTFSRKEHLSRHLVSHSGQKMY 766
                    ||||.|.|:.|.||..|:..|:.|||                              |
Zfish   446 TSSRLLHRCPTCNRCFQFKHHLQSHMNSHSNLRP------------------------------Y 480

  Fly   767 TCEVCKKPFSRKDNLNKHRRI-HTQTSTETLYCCDVCNKNFATKLHYEKH-REMHKKIRPESAAP 829
            .|.||:|.::...:|:.|.:: |.::......||:.|.|:|.....|..| ||:|:.|       
Zfish   481 VCPVCRKAYAHSGSLSTHMKLHHAESKPRKSLCCEFCEKSFGYVGVYFSHLREVHRVI------- 538

  Fly   830 GATASPAAAPALTHVRSNGQVPNKAVFEIKQERSAQQ 866
             .|..|:.:   .|..|   :..:...||.::.|.|:
Zfish   539 -LTVEPSIS---QHEES---ISVEESSEIDEQASEQR 568

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
padNP_650534.2 zf-AD 16..87 CDD:214871
C2H2 Zn finger 710..730 CDD:275368 10/19 (53%)
zf-C2H2 736..760 CDD:278523 0/23 (0%)
C2H2 Zn finger 738..760 CDD:275368 0/21 (0%)
zf-H2C2_2 752..777 CDD:290200 5/24 (21%)
zf-C2H2 766..788 CDD:278523 7/22 (32%)
C2H2 Zn finger 768..788 CDD:275368 6/20 (30%)
zf-H2C2_2 780..808 CDD:290200 8/28 (29%)
C2H2 Zn finger 799..819 CDD:275368 8/20 (40%)
znf438NP_001070629.1 zf-C2H2 452..474 CDD:278523 10/21 (48%)
C2H2 Zn finger 454..474 CDD:275368 10/19 (53%)
zf-H2C2_2 466..491 CDD:290200 12/54 (22%)
C2H2 Zn finger 482..502 CDD:275368 6/19 (32%)
C2H2 Zn finger 514..532 CDD:275368 6/17 (35%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
00.000

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