DRSC/TRiP Functional Genomics Resources

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Protein Alignment pad and Spps

DIOPT Version :10

Sequence 1:NP_650534.2 Gene:pad / 41981 FlyBaseID:FBgn0038418 Length:924 Species:Drosophila melanogaster
Sequence 2:NP_001262902.1 Gene:Spps / 42882 FlyBaseID:FBgn0039169 Length:985 Species:Drosophila melanogaster


Alignment Length:1019 Identity:232/1019 - (22%)
Similarity:348/1019 - (34%) Gaps:357/1019 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   116 SVAQSAPPV--------------PNGAQQSGN-----------LLNSIIQAVNMQPQQQYTITMD 155
            |.|.||||.              ||||..:.:           .:..||....|.||........
  Fly     9 SAATSAPPATPLAAGGSSKATIPPNGASAAASQTQVHGAPGTPTMQQIINIHQMPPQFAGGAVAG 73

  Fly   156 NGVQQQQQQH-----QAMPEVQIKSERQTALEEFIRLKPDIK-----------------ITPLGK 198
            ||......|:     |.||...:..:.|.|:  ||   |::.                 |||.|:
  Fly    74 NGQNAGMPQNMFQIVQPMPMQTVNIDGQEAI--FI---PNLNAQLATAQAVNFNGQQAFITPNGQ 133

  Fly   199 --KEPISPAKP--------QQQHSL-QSQTVTPTINPTQLQLQPQLGDQLQPLWQQIQQLQLQQQ 252
              :.|...|.|        ||.:.| |.||...||..|.:|:         |:...|||.|..||
  Fly   134 ILRAPQMAANPAASNCIQLQQLNGLGQEQTQLITIPGTNIQI---------PVTNLIQQQQQAQQ 189

  Fly   253 LQQLTNQLQATTQYSVAQDDTSSSGDSKKPKLNFVLSSPTAPQFTTSMPQFGGSQPQIQLQLMPG 317
            :.|.|.|.||        ..|::||.:.    :.|.:|.||.|                   :||
  Fly   190 VHQGTVQQQA--------QGTNASGANG----SGVTNSGTAGQ-------------------LPG 223

  Fly   318 SGGVTSAGTVPAQTQLNAAALLSSLAGPQSTTNLLSPNKCFLPITIRDEN--------------- 367
            |  :|..|| ..|...:.||....|....:.:|||...:     :|:.||               
  Fly   224 S--ITIPGT-NLQIPTSVAAANGLLGNISNISNLLGGGQ-----SIKLENGQLQMRPQLVQFPAP 280

  Fly   368 ---SDQQIVA-----------------HI----------------DTKNLVLPTTYQVQMKLQ-- 394
               ..||.||                 |:                ..::|.:|:..|:|:..|  
  Fly   281 AMPQQQQTVAVQIPVQTANGQTIYQTVHVPVQAAATSSGGLQNLMQAQSLQMPSASQMQIIPQFS 345

  Fly   395 --PQLATADGQ--------PIMQLTPTSIPATLQLTPQTLGNPGSAFQGTTVTQNQFLAPQQPLT 449
              .|:.|.:||        |..||.|.:....:|       ||....|.....|.|....||...
  Fly   346 QIAQIVTPNGQIQQVQLAMPYPQLPPNANIIHIQ-------NPHQQQQQQVQQQQQQQQAQQQQQ 403

  Fly   450 QLPNTAQVTSQQIIRSPHTSTTNSQLVIRNVTN------IPPT-PTTPTSSK------------- 494
            .....||...||.:::.|      |.:::.:::      :||. |.|.|:::             
  Fly   404 AQQQQAQQQQQQQVQAQH------QQLLQAISDASAGGQLPPNQPITITNAQGQQLTVIPAQLRP 462

  Fly   495 KAPTFKTPSPKQKPMPSPKSKTTVGPSSG----------GSNGTSTN---EFKRLITQ-TKPQPQ 545
            .|||..||:|...|.|.........|...          .:|....|   .|::::|| ....||
  Fly   463 NAPTAPTPAPAGVPTPMQMPNLQALPIQNIPGLGQVQIIHANQLPPNLPANFQQVLTQLPMSHPQ 527

  Fly   546 VKQQQTAGLSASGAPTATSANQAAMQRLSSNTTITKVPKQP----------ASLPAPAPTSNPA- 599
            |:.|....:.....|.            |....||.:.::|          .:.||||.|.|.| 
  Fly   528 VQTQGQVQVMPKQEPQ------------SPTQMITSIKQEPPDTFGPISATGNPPAPASTPNTAS 580

  Fly   600 ----KLPMLNKQNITISRISMQTAPKAQSKP--STTSP-TPA-SQPIPVSVPALSQAQPPPLAAQ 656
                ::..|:.::.::|.:|:..:.:..:.|  :|.:| ||| :||||||:||.|:..  .:...
  Fly   581 PQQQQIKFLHTESNSLSSLSIPASIQITALPQQATNTPNTPATTQPIPVSLPARSKVN--AVTTS 643

  Fly   657 HKKIVRKPPENQDTSGQ-------------KVKAARPPQQILPSPQQE----------------- 691
            ..:|...|     |.||             .:::.......:.:|.|.                 
  Fly   644 STQITIAP-----TGGQVVSVTTQARGATASIRSTNTSTTTITTPSQSHLNMNISVASVGGAATG 703

  Fly   692 GQNATHSGSEAPTTS--GLICPTC----KREFKKKEHLTQHVKLHAGLRPFKCSEEGCDKTFSRK 750
            |...|.:|...|...  ...||.|    |...||::|:              |...||.|.:.:.
  Fly   704 GGGGTATGEPKPRLKRVACTCPNCTDGEKHSDKKRQHI--------------CHITGCHKVYGKT 754

  Fly   751 EHLSRHLVSHSGQKMYTCE--VCKKPFSRKDNLNKHRRIHTQTSTETLYCCDVCNKNFATKLHYE 813
            .||..||..|:|::.:.|.  .|.|.|:|.|.|.:|||.||   .|..:.|..|||.|....|..
  Fly   755 SHLRAHLRWHTGERPFVCSWAFCGKRFTRSDELQRHRRTHT---GEKRFQCQECNKKFMRSDHLS 816

  Fly   814 KHREMHKKIRPESAAPGATASPAAAPALTHVRSNGQVPNKAVFEIKQERSAQQTQTQQPPAQVMH 878
            ||.:                        ||.:|...|      |:.:....|:|:....|..:..
  Fly   817 KHIK------------------------THFKSRSGV------ELIELSIKQETKGGNAPKSIST 851

  Fly   879 V--VTTQDLAG----------NTITITQAPDSNMPGSLANYVQL 910
            |  :.|.::.|          :::..|.|..:..||. |..|||
  Fly   852 VNGIVTIEIPGGGSAAAGSGASSVAATVAGSTVTPGG-ATIVQL 894

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
padNP_650534.2 zf-AD 16..88 CDD:462262
PHA03247 <497..709 CDD:223021 58/276 (21%)
C2H2 Zn finger 710..730 CDD:275368 7/23 (30%)
zf-C2H2 736..760 CDD:395048 8/23 (35%)
C2H2 Zn finger 738..760 CDD:275368 8/21 (38%)
zf-C2H2 766..788 CDD:395048 10/23 (43%)
C2H2 Zn finger 768..788 CDD:275368 10/21 (48%)
zf-C2H2 797..819 CDD:395048 8/21 (38%)
C2H2 Zn finger 799..819 CDD:275368 8/19 (42%)
SppsNP_001262902.1 SP1-4_N <281..>371 CDD:425404 17/89 (19%)
Atrophin-1 284..>630 CDD:460830 80/370 (22%)
SP1-4_N <713..741 CDD:425404 7/27 (26%)
C2H2 Zn finger 742..764 CDD:275368 8/21 (38%)
zf-H2C2_2 756..783 CDD:463886 10/26 (38%)
C2H2 Zn finger 772..794 CDD:275368 10/21 (48%)
zf-H2C2_2 786..809 CDD:463886 11/25 (44%)
zf-C2H2 800..822 CDD:395048 8/45 (18%)
C2H2 Zn finger 802..822 CDD:275368 8/43 (19%)
Blue background indicates that the domain is not in the aligned region.

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