DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pad and MTF-1

DIOPT Version :9

Sequence 1:NP_650534.2 Gene:pad / 41981 FlyBaseID:FBgn0038418 Length:924 Species:Drosophila melanogaster
Sequence 2:NP_001097560.1 Gene:MTF-1 / 39089 FlyBaseID:FBgn0040305 Length:1006 Species:Drosophila melanogaster


Alignment Length:700 Identity:150/700 - (21%)
Similarity:223/700 - (31%) Gaps:241/700 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   245 QQLQLQQQLQQLTNQLQATT------QYSVAQD-DTSSSGD--SKKPKLNFVLSSPTAPQFTTSM 300
            |:.|.|||.|...:....||      ..|.::| ||:||.:  |..|.:....||..:..|...:
  Fly     4 QEKQHQQQQQHYFHSEWKTTANSHGNSLSDSRDYDTNSSRNSLSGSPPVTSNCSSSGSLDFDRPL 68

  Fly   301 PQFGGSQPQIQ---LQLMPGS-----GGVTSAGTVPAQTQLN---------AAALLSSLAGPQST 348
            .|.  .:|:::   |.::.|.     |..|:..|...|..||         |.|....|.|.|. 
  Fly    69 AQL--LEPKLEADGLGIIHGDNYSIYGSQTAESTSGEQQVLNLGLTLDTGDAQATYGDLFGAQD- 130

  Fly   349 TNLLSPNKCFLPITIRDENSDQQIVAHIDTKNLVLPTTYQVQMKLQPQLATADGQPIMQLTP--- 410
                       .:|....:...|:|......|               ..:.||     ||||   
  Fly   131 -----------QLTASQTHGHSQVVVSAAADN---------------AFSLAD-----QLTPLPI 164

  Fly   411 TSIPATLQLTPQTLGNPGSAFQGTTVTQNQFLAPQQPLTQLPNTAQVTSQQIIRSPHTSTTNSQL 475
            |.||.|...|.:.|.:..|               :.||  :.:.:.:|:|.........|...|.
  Fly   165 TVIPITYHHTTENLSSSHS---------------EVPL--IASLSDITAQVFNLDDICFTLEYQF 212

  Fly   476 VIRNVTNIPPTPTTPTSSKKAPTFKTPSPKQKPMPSPKSKTTVGPSSGGSNGTSTNEFKRLITQT 540
                                                                    |.:||:   
  Fly   213 --------------------------------------------------------ENQRLV--- 218

  Fly   541 KPQPQVKQQQTAGLSASGAPTATSANQAAMQRLSSNTTITKVPKQPASLPAPAPTSNPAKLPMLN 605
                ||:......||...:|     |:||              ..|.:......|.|        
  Fly   219 ----QVQPPTVVSLSMVSSP-----NEAA--------------NPPINCDNDQGTGN-------- 252

  Fly   606 KQNITISRISMQTAPKAQSKPSTTSPTPASQPIPVSVPALSQAQPPPLAAQHKKIVRKPPENQDT 670
                :|||             .:||.:||...|..|.........|....|....::....:||.
  Fly   253 ----SISR-------------DSTSNSPAYFTIETSYVDEYDPNEPDEDEQLAHCIQPGVLHQDV 300

  Fly   671 SGQKVKAARPPQQILPSPQQEGQNA--------------------------THSGSEAPTTSGLI 709
            ..::|:......|::....:....|                          ||:|..:     ..
  Fly   301 DEEEVERQDENDQLMALAYESSDEALSRYRCNYENCYRSYSTIGNLRTHLKTHTGDYS-----FK 360

  Fly   710 CPT--CKREFKKKEHLTQHVKLHAGLRPFKCSEEGCDKTFSRKEHLSRHLVSHSGQKMYTCEVCK 772
            ||.  |.:.|.....|..||::|..::|::|...||||.|:.:..|..||..|:|: .:.||:|:
  Fly   361 CPEDGCHKAFLTSYSLKIHVRVHTKVKPYECEVSGCDKAFNTRYRLHAHLRLHNGE-TFNCELCQ 424

  Fly   773 KPFSRKDNLNKHRRIHTQTSTETLYCC--DVCNKNFATKLHYEKHREMHKKIRP-----ESAAPG 830
            |.|:...:|.||.|.|||   |..|.|  |.|.|.|....|.:.||..|...:|     :|....
  Fly   425 KCFTTLSDLKKHMRTHTQ---ERPYKCPEDDCGKAFTASHHLKTHRRTHTGEKPYPCQEDSCQKS 486

  Fly   831 -ATASPAAAPALTHVRSNGQVPNKAVFEIKQERSAQQT----QTQQPPAQ 875
             :|:....:...||.|   |:.||.  ..|:....|||    |.|:.|.|
  Fly   487 FSTSHSLKSHKKTHQR---QLQNKG--RKKRPLKTQQTKCSDQEQKDPQQ 531

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
padNP_650534.2 zf-AD 16..87 CDD:214871
C2H2 Zn finger 710..730 CDD:275368 7/21 (33%)
zf-C2H2 736..760 CDD:278523 9/23 (39%)
C2H2 Zn finger 738..760 CDD:275368 9/21 (43%)
zf-H2C2_2 752..777 CDD:290200 10/24 (42%)
zf-C2H2 766..788 CDD:278523 9/21 (43%)
C2H2 Zn finger 768..788 CDD:275368 9/19 (47%)
zf-H2C2_2 780..808 CDD:290200 14/29 (48%)
C2H2 Zn finger 799..819 CDD:275368 8/21 (38%)
MTF-1NP_001097560.1 zf-C2H2_aberr 329..471 CDD:293622 45/150 (30%)
C2H2 Zn finger 331..353 CDD:275368 0/21 (0%)
zf-H2C2_2 345..372 CDD:290200 7/31 (23%)
C2H2 Zn finger 361..383 CDD:275368 7/21 (33%)
zf-H2C2_2 375..402 CDD:290200 11/26 (42%)
C2H2 Zn finger 391..413 CDD:275368 9/21 (43%)
zf-C2H2 418..440 CDD:278523 9/21 (43%)
C2H2 Zn finger 420..440 CDD:275368 9/19 (47%)
zf-H2C2_2 432..458 CDD:290200 13/28 (46%)
COG5048 442..>519 CDD:227381 23/84 (27%)
C2H2 Zn finger 448..470 CDD:275368 8/21 (38%)
zf-H2C2_2 462..489 CDD:290200 6/26 (23%)
C2H2 Zn finger 478..500 CDD:275368 2/21 (10%)
DUF3682 862..>931 CDD:289231
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24377
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.010

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