DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pad and Sp3

DIOPT Version :9

Sequence 1:NP_650534.2 Gene:pad / 41981 FlyBaseID:FBgn0038418 Length:924 Species:Drosophila melanogaster
Sequence 2:XP_038962304.1 Gene:Sp3 / 367846 RGDID:1583765 Length:781 Species:Rattus norvegicus


Alignment Length:767 Identity:182/767 - (23%)
Similarity:282/767 - (36%) Gaps:193/767 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   144 MQPQQQYTITMDNG---------VQQQQQQHQAMPEVQIKSERQTALEEFIRLKPDIKITPL--- 196
            ::.::...:.:|:|         :||||||.|........:..|           |.:.:||   
  Rat     8 VKQEEMAALDVDSGGGGGGHGEYLQQQQQQQQHGNGAAAAAAAQ-----------DTQPSPLALL 61

  Fly   197 ----GKKEPISPAKPQQQ---------------------------HSLQSQTVTPTINPTQLQLQ 230
                .|..|.||...:::                           :..:..:.|||      .::
  Rat    62 AATCSKIGPPSPGDDEEEAAAAAGVPAAAAGATGDLASAQLGGAPNRWEVLSATPT------TIK 120

  Fly   231 PQLGDQLQPLWQQIQQLQLQQQLQQLTNQLQATTQYSVAQDDTSSSGDSKKPKLNFV--LSSPTA 293
            .:.|:.:|.........|....||.|.||    ..:|||....||:|.....:...:  :.|..|
  Rat   121 DEAGNLVQIPGAATSSGQYVLPLQNLQNQ----QIFSVAPGSDSSNGTVSNVQYQVIPQIQSTDA 181

  Fly   294 PQ----FTTSMPQFGGSQPQIQLQLMPGSG-GVTSAGTVPA----------QTQLNAAAL-LSSL 342
            .|    ||.|....|.:|...|:|::|||. .:.::||.||          |.|:...|: .||.
  Rat   182 QQVQIGFTGSSDNGGINQESSQIQIIPGSNQTLLASGTPPANIQNLIPQTGQVQVQGVAIGGSSF 246

  Fly   343 AG-PQSTTNL---LSPNKCFLPITIRD------ENSDQQIVAHIDTKNLVLPT---------TYQ 388
            .| .|...|:   |..|..|:||...|      ..|.|.:.|.|:....::.|         :.:
  Rat   247 PGQTQVVANVPLGLPGNITFVPINSVDLDSLGLSGSSQTMTAGINADGHLINTGQAMDSSDNSER 311

  Fly   389 VQMKLQPQLATADGQPIMQLTPTSIPATLQLTPQTLGNPGSAFQGT---TVTQ----------NQ 440
            ...::.|.:...:....: ..|||..:.|   |.|:.:.|...|.|   |.|.          |.
  Rat   312 TGERVSPDVNETNADTDL-FVPTSSSSQL---PVTIDSTGILQQNTNSLTTTSGQVHSSDLQGNY 372

  Fly   441 FLAPQQPLTQLPNTAQVTSQQIIRSPHTSTTNSQLVIRNVTNIPPTPTTPTSSKKAPTFKTPSPK 505
            ..:|....||..|....|:|.:::  |....:||              .|||..:.....||   
  Rat   373 IQSPVSEETQAQNIQVSTAQPVVQ--HLQLQDSQ--------------QPTSQAQIVQGITP--- 418

  Fly   506 QKPMPSPKSKTTVGPSSGGSNGTSTNEFKRLITQTKPQPQVKQQQTAGLSASGAPTATSANQAAM 570
                     :|..|..:.|.| .|....:.|..|..|...:.|.||  ::.||..|..:.....:
  Rat   419 ---------QTIHGVQASGQN-ISQQALQNLQLQLNPGTFLIQAQT--VTPSGQITWQTFQVQGV 471

  Fly   571 QRLSS----NTT---ITKVPKQPASL----PAPAPTSNPAKL---PMLNKQNITISRISMQTAPK 621
            |.|.:    ||.   ||..|.|..:|    ...|.||.|..|   .:.|.|.:|::.|.   :..
  Rat   472 QNLQNLQIQNTAAQQITLTPVQTLTLGQVAAGGALTSTPVSLSTGQLPNLQTVTVNSID---STG 533

  Fly   622 AQSKPSTTSPTPASQPIPVSVPALSQAQPPPLAAQ-------------HKKIVRKPPENQDTSGQ 673
            .|..|...:.:||...|       .:.:|.|...|             |.: |:...|..|...|
  Rat   534 IQLHPGENADSPADIRI-------KEEEPDPEEWQLSGDSTLNTNDLTHLR-VQVVDEEGDQQHQ 590

  Fly   674 KVKAARPPQQILPSPQQEGQNATHSGSEAPTTSGLIC--PTCKREFKKKEHLTQHVKLHAGLRPF 736
            :.|..|......|:.::.|...|:.|.:...    ||  |.|.:.:.|..||..|::.|:|.|||
  Rat   591 EGKRLRRVACTCPNCKEGGGRGTNLGKKKQH----ICHIPGCGKVYGKTSHLRAHLRWHSGERPF 651

  Fly   737 KCSEEGCDKTFSRKEHLSRHLVSHSGQKMYTCEVCKKPFSRKDNLNKHRRIH 788
            .|:...|.|.|:|.:.|.||..:|:|:|.:.|..|.|.|.|.|:|.||.:.|
  Rat   652 ICNWMFCGKRFTRSDELQRHRRTHTGEKKFVCPECSKRFMRSDHLAKHIKTH 703

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
padNP_650534.2 zf-AD 16..87 CDD:214871
C2H2 Zn finger 710..730 CDD:275368 7/21 (33%)
zf-C2H2 736..760 CDD:278523 9/23 (39%)
C2H2 Zn finger 738..760 CDD:275368 8/21 (38%)
zf-H2C2_2 752..777 CDD:290200 10/24 (42%)
zf-C2H2 766..788 CDD:278523 9/21 (43%)
C2H2 Zn finger 768..788 CDD:275368 9/19 (47%)
zf-H2C2_2 780..808 CDD:290200 4/9 (44%)
C2H2 Zn finger 799..819 CDD:275368
Sp3XP_038962304.1 SP3_N 51..622 CDD:411774 139/641 (22%)
zf-C2H2 621..645 CDD:395048 8/27 (30%)
C2H2 Zn finger 623..645 CDD:275368 7/21 (33%)
zf-C2H2 651..675 CDD:395048 9/23 (39%)
C2H2 Zn finger 653..675 CDD:275368 8/21 (38%)
zf-H2C2_2 667..690 CDD:404364 9/22 (41%)
zf-C2H2 681..703 CDD:395048 9/21 (43%)
C2H2 Zn finger 683..703 CDD:275368 9/19 (47%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

Return to query results.
Submit another query.