DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pad and egr1

DIOPT Version :9

Sequence 1:NP_650534.2 Gene:pad / 41981 FlyBaseID:FBgn0038418 Length:924 Species:Drosophila melanogaster
Sequence 2:NP_571323.1 Gene:egr1 / 30498 ZFINID:ZDB-GENE-980526-320 Length:511 Species:Danio rerio


Alignment Length:588 Identity:139/588 - (23%)
Similarity:223/588 - (37%) Gaps:179/588 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   381 LVLPTTYQVQMKLQPQLATADGQP----IMQLTPTSIPATLQLTPQTL----GNPGSAFQ---GT 434
            ::|| ..|:...|....:..|..|    ::.|.....|......|:..    |.||..|.   |.
Zfish     8 MLLP-ALQISDPLSFPHSPTDNYPKLEEMIMLNSAGTPFLNATAPEGAVFGSGEPGEQFDHLAGD 71

  Fly   435 TVTQNQFLAPQQPLT-------QLP---NTAQVTSQQIIRSPHTSTTNS-------QLVIRNVTN 482
            |:::   ::.::||:       :||   .|.:.|.:     |.|:.:||       .||...|..
Zfish    72 TLSE---ISMEKPLSDQTYSTQRLPPISYTGRFTLE-----PATNCSNSLWAEPLFSLVSGLVGI 128

  Fly   483 IPPTPTTPTSSKKAPTFKTPSPKQKPMPSPKSKTTVGPSSGGSNGTSTNEFKRLITQTKPQPQVK 547
            .||..:.|:|:.:|             ..|.|.:|....|..|:.||:......:.|::|.|   
Zfish   129 NPPPASIPSSTSQA-------------THPSSSSTSSIPSSSSSSTSSASLSCSVHQSEPNP--- 177

  Fly   548 QQQTAGLSASGAPTATSANQAAMQRLSSN--TTI-TKVPKQPASLPAPAPTSNPA-KLPMLNKQN 608
                   ..|.|||.:||:.........|  ||: |.:....::.|: |.|.||: .:||:....
Zfish   178 -------IYSAAPTYSSASPDIFPESGPNFSTTVGTSLQYSSSTYPS-AKTCNPSFSVPMIPDYL 234

  Fly   609 ITISRISMQTAPKAQSKPSTTSPTPASQPIPVSVPALSQAQPPPLAAQH--KKIVRKPPENQDTS 671
            .|..:..:...|            |..:||....     .|.|.|...|  |....:      |.
Zfish   235 FTQQQSEISLVP------------PDQKPIQTQA-----GQQPALTPLHTIKAFATQ------TG 276

  Fly   672 GQKVKAARPPQQILPS-----PQQEGQNATHSGSEAPTTSGLICP--TCKREFKKKEHLTQHVKL 729
            .|.:|:....|.|.||     |.:..:...|   |.|    ..||  ||.|.|.:.:.||:|:::
Zfish   277 SQDLKSVYQSQLIKPSRMRKYPNRPSKTPPH---ERP----YACPVETCDRRFSRSDELTRHIRI 334

  Fly   730 HAGLRPFKCSEEGCDKTFSRKEHLSRHLVSHSGQKMYTCEVCKKPFSRKDNLNKHRRIHTQTSTE 794
            |.|.:||:|  ..|.:.|||.:||:.|:.:|:|:|.:.||:|.:.|:|.|...:|.:||.     
Zfish   335 HTGQKPFQC--RICMRNFSRSDHLTTHIRTHTGEKPFACEICGRKFARSDERKRHTKIHM----- 392

  Fly   795 TLYCCDVCNKNFATKLHYEKHREMHKKIRPESAAPGATASPAAAPALTHVRSNGQVPNKAVFEIK 859
                                 |:..||     |..||||:         |:|:  |.|.::    
Zfish   393 ---------------------RQKDKK-----AEKGATAA---------VQSS--VSNISI---- 416

  Fly   860 QERSAQQTQTQQPPAQVMHVVTTQDLAGNTITITQAPDSNMPGSL----ANYVQLGFSQFQNPSA 920
               ||....:..|               :.||...:|.|:.|..:    ::.|...:     ||.
Zfish   417 ---SASSPVSSYP---------------SPITSYPSPVSSFPSPVNSCYSSPVHTSY-----PSP 458

  Fly   921 SVA 923
            |:|
Zfish   459 SIA 461

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
padNP_650534.2 zf-AD 16..87 CDD:214871
C2H2 Zn finger 710..730 CDD:275368 9/21 (43%)
zf-C2H2 736..760 CDD:278523 9/23 (39%)
C2H2 Zn finger 738..760 CDD:275368 8/21 (38%)
zf-H2C2_2 752..777 CDD:290200 10/24 (42%)
zf-C2H2 766..788 CDD:278523 7/21 (33%)
C2H2 Zn finger 768..788 CDD:275368 7/19 (37%)
zf-H2C2_2 780..808 CDD:290200 3/27 (11%)
C2H2 Zn finger 799..819 CDD:275368 1/19 (5%)
egr1NP_571323.1 DUF3446 99..185 CDD:288757 26/113 (23%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 133..169 10/48 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 291..312 6/27 (22%)
zf-C2H2 311..335 CDD:278523 9/23 (39%)
C2H2 Zn finger 313..335 CDD:275368 9/21 (43%)
zf-H2C2_2 327..352 CDD:290200 10/26 (38%)
C2H2 Zn finger 343..363 CDD:275368 8/21 (38%)
zf-H2C2_2 355..380 CDD:290200 10/24 (42%)
C2H2 Zn finger 371..391 CDD:275368 7/19 (37%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 384..406 10/52 (19%)
DUF3432 403..498 CDD:288743 20/97 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
00.000

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