DRSC/TRiP Functional Genomics Resources

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Protein Alignment pad and Sp4

DIOPT Version :10

Sequence 1:NP_650534.2 Gene:pad / 41981 FlyBaseID:FBgn0038418 Length:924 Species:Drosophila melanogaster
Sequence 2:NP_036893.1 Gene:Sp4 / 25162 RGDID:3741 Length:783 Species:Rattus norvegicus


Alignment Length:853 Identity:197/853 - (23%)
Similarity:293/853 - (34%) Gaps:240/853 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   159 QQQQQQHQAMPEVQIKSERQTALEEFIRLKPDIKITPLGKKEPISPAKPQQQHS---LQSQTVTP 220
            |:::::.:|...:..:..:.:..|.             ..|:|.:......|.|   |.:.|.:.
  Rat     4 QKKEEEEEAAAAMATEGGKTSEPEN-------------NNKKPKTSGSQDSQPSPLALLAATCSK 55

  Fly   221 TINPTQLQLQPQLGDQLQPLWQQIQQLQLQ-QQLQQLTNQL------------QATTQYSVAQDD 272
            ...|.:.|...|....:.|. |.:.|||.| |||:.:|.||            .|:.:.:|:|..
  Rat    56 IGTPGENQATGQQQIIIDPS-QGLVQLQNQPQQLELVTTQLAGNAWQLVASTPPASKENNVSQPA 119

  Fly   273 TSSSGDSKKPKLNFVLSSPTAPQF-TTSMP-QF---------GGSQPQI--QLQLMPGSGGVTSA 324
            :|||..|..   |...||||..:. ..|.| ||         |..|.|:  |||.:.|.      
  Rat   120 SSSSSSSSS---NNGSSSPTKTKSGNPSTPNQFQVIQVQNPSGSVQYQVIPQLQTVEGQ------ 175

  Fly   325 GTVPAQTQLNAAALLSSLAGPQSTTNLLSPNKCFLPITIRDENSDQQIVAHIDTKNLVLPTTYQV 389
                 |.|:|..: .|||...|....|:|.......:|..:..:...|:|. :..|..:|...:.
  Rat   176 -----QIQINPTS-SSSLQDLQGQIQLISAGNNQAILTAANRTASGNILAQ-NLANQTVPVQIRP 233

  Fly   390 QMKLQPQLATADGQPIMQLTPTSIPATLQLTPQTLGNPGSAFQGTTVTQNQFLAPQQPLTQLPNT 454
            .:.:..||.|..|      |...:..||.:      |.|.......|..|        :|....|
  Rat   234 GVSIPLQLQTLPG------TQAQVVTTLPI------NIGGVTLALPVINN--------VTAGGGT 278

  Fly   455 AQVTSQQIIRSPHTSTTNS------QLVIRNVTNIPPTPTTPTSSKKAPTFKTPSPKQKPMPSPK 513
            .||      ..|.|:||:|      |||....|:..|..|.|.|...:.|..|.:...    ...
  Rat   279 GQV------GQPTTTTTDSGTSNGNQLVSTPTTSTAPASTMPESPSSSTTCTTTASTS----LTS 333

  Fly   514 SKTTVGPSSGGS-NGTSTNEFKRLI--TQTKPQPQVKQQQTAGLSASGAPTATSANQAAMQ---- 571
            |.|.|..:..|. ..||.:..:|.|  .||....:.:.|.::.|.::|...|...:.:..|    
  Rat   334 SDTLVSSADTGQYASTSASSSERTIEEPQTPAATESEAQSSSQLQSNGIQNAQDQSNSLQQVQIV 398

  Fly   572 --------------------------RLSSNTTITKVPKQP---ASLPAPAPTSNPAKLPMLNK- 606
                                      :|.|..||..:.:||   ..|.|..||....:.|.|.. 
  Rat   399 GQPILQQIQIQQPQQQIIQAIPPQSFQLQSGQTIQTIQQQPLQNVQLQAVNPTQVLIRAPTLTPS 463

  Fly   607 ----------QNI-TISRISMQTAPKAQ----SKPSTTSPTPASQPIPV---------------S 641
                      ||| ::|.:.:|.|..:|    :..|::..|..:|..||               |
  Rat   464 GQISWQTVQVQNIQSLSNLQVQNAGLSQQLTITPVSSSGGTTLAQIAPVAVAGAPITLNTAQLAS 528

  Fly   642 VPALSQAQPPPLAAQHKKIVRKP-------PENQDTSGQKVKAAR-------------------P 680
            ||.|.......|.|...::...|       .:.|...|.||:.|.                   .
  Rat   529 VPNLQTVSVANLGAAGVQVQGVPVTITSVAGQQQGQDGVKVQQATIAPVTVAVGGIANATIGAVS 593

  Fly   681 PQQILPSPQQEGQNATHSGSEAPTTSG-------LICPTCK--------REFKKKEHLTQHVKLH 730
            |.|:.....|:||..    |:|....|       ..||.|:        ...|||:|:       
  Rat   594 PDQLTQVHLQQGQQT----SDAEVQPGKRLRRVACSCPNCREGEGRGSSEPGKKKQHV------- 647

  Fly   731 AGLRPFKCSEEGCDKTFSRKEHLSRHLVSHSGQKMYTCE--VCKKPFSRKDNLNKHRRIHTQTST 793
                   |..|||.|.:.:..||..||..|:|::.:.|.  .|.|.|:|.|.|.:|||.||   .
  Rat   648 -------CHIEGCGKVYGKTSHLRAHLRWHTGERPFICNWMFCGKRFTRSDELQRHRRTHT---G 702

  Fly   794 ETLYCCDVCNKNFATKLHYEKHREMHKKIRPESAAPGATASPAAAPALTHV-------------- 844
            |..:.|..|:|.|....|..||.:.|:..:....|.....|.....::|.|              
  Rat   703 EKRFECPECSKRFMRSDHLSKHVKTHQNKKGGGTALAIVTSGELDSSVTEVLGSPRIVTVAAISQ 767

  Fly   845 RSNGQVPN 852
            .||...||
  Rat   768 DSNPATPN 775

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
padNP_650534.2 zf-AD 16..88 CDD:462262
PHA03247 <497..709 CDD:223021 61/311 (20%)
C2H2 Zn finger 710..730 CDD:275368 7/27 (26%)
zf-C2H2 736..760 CDD:395048 9/23 (39%)
C2H2 Zn finger 738..760 CDD:275368 9/21 (43%)
zf-C2H2 766..788 CDD:395048 10/23 (43%)
C2H2 Zn finger 768..788 CDD:275368 10/21 (48%)
zf-C2H2 797..819 CDD:395048 7/21 (33%)
C2H2 Zn finger 799..819 CDD:275368 7/19 (37%)
Sp4NP_036893.1 SP4_N 30..647 CDD:411773 153/667 (23%)
zf-C2H2 646..670 CDD:395048 10/37 (27%)
C2H2 Zn finger 648..670 CDD:275368 9/21 (43%)
zf-C2H2 676..700 CDD:395048 10/23 (43%)
C2H2 Zn finger 678..700 CDD:275368 10/21 (48%)
zf-H2C2_2 692..715 CDD:463886 10/25 (40%)
zf-C2H2 706..728 CDD:395048 7/21 (33%)
C2H2 Zn finger 708..728 CDD:275368 7/19 (37%)
Blue background indicates that the domain is not in the aligned region.

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