DRSC/TRiP Functional Genomics Resources

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Protein Alignment pad and Sp4

DIOPT Version :9

Sequence 1:NP_650534.2 Gene:pad / 41981 FlyBaseID:FBgn0038418 Length:924 Species:Drosophila melanogaster
Sequence 2:NP_036893.1 Gene:Sp4 / 25162 RGDID:3741 Length:783 Species:Rattus norvegicus


Alignment Length:853 Identity:197/853 - (23%)
Similarity:293/853 - (34%) Gaps:240/853 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   159 QQQQQQHQAMPEVQIKSERQTALEEFIRLKPDIKITPLGKKEPISPAKPQQQHS---LQSQTVTP 220
            |:::::.:|...:..:..:.:..|.             ..|:|.:......|.|   |.:.|.:.
  Rat     4 QKKEEEEEAAAAMATEGGKTSEPEN-------------NNKKPKTSGSQDSQPSPLALLAATCSK 55

  Fly   221 TINPTQLQLQPQLGDQLQPLWQQIQQLQLQ-QQLQQLTNQL------------QATTQYSVAQDD 272
            ...|.:.|...|....:.|. |.:.|||.| |||:.:|.||            .|:.:.:|:|..
  Rat    56 IGTPGENQATGQQQIIIDPS-QGLVQLQNQPQQLELVTTQLAGNAWQLVASTPPASKENNVSQPA 119

  Fly   273 TSSSGDSKKPKLNFVLSSPTAPQF-TTSMP-QF---------GGSQPQI--QLQLMPGSGGVTSA 324
            :|||..|..   |...||||..:. ..|.| ||         |..|.|:  |||.:.|.      
  Rat   120 SSSSSSSSS---NNGSSSPTKTKSGNPSTPNQFQVIQVQNPSGSVQYQVIPQLQTVEGQ------ 175

  Fly   325 GTVPAQTQLNAAALLSSLAGPQSTTNLLSPNKCFLPITIRDENSDQQIVAHIDTKNLVLPTTYQV 389
                 |.|:|..: .|||...|....|:|.......:|..:..:...|:|. :..|..:|...:.
  Rat   176 -----QIQINPTS-SSSLQDLQGQIQLISAGNNQAILTAANRTASGNILAQ-NLANQTVPVQIRP 233

  Fly   390 QMKLQPQLATADGQPIMQLTPTSIPATLQLTPQTLGNPGSAFQGTTVTQNQFLAPQQPLTQLPNT 454
            .:.:..||.|..|      |...:..||.:      |.|.......|..|        :|....|
  Rat   234 GVSIPLQLQTLPG------TQAQVVTTLPI------NIGGVTLALPVINN--------VTAGGGT 278

  Fly   455 AQVTSQQIIRSPHTSTTNS------QLVIRNVTNIPPTPTTPTSSKKAPTFKTPSPKQKPMPSPK 513
            .||      ..|.|:||:|      |||....|:..|..|.|.|...:.|..|.:...    ...
  Rat   279 GQV------GQPTTTTTDSGTSNGNQLVSTPTTSTAPASTMPESPSSSTTCTTTASTS----LTS 333

  Fly   514 SKTTVGPSSGGS-NGTSTNEFKRLI--TQTKPQPQVKQQQTAGLSASGAPTATSANQAAMQ---- 571
            |.|.|..:..|. ..||.:..:|.|  .||....:.:.|.::.|.::|...|...:.:..|    
  Rat   334 SDTLVSSADTGQYASTSASSSERTIEEPQTPAATESEAQSSSQLQSNGIQNAQDQSNSLQQVQIV 398

  Fly   572 --------------------------RLSSNTTITKVPKQP---ASLPAPAPTSNPAKLPMLNK- 606
                                      :|.|..||..:.:||   ..|.|..||....:.|.|.. 
  Rat   399 GQPILQQIQIQQPQQQIIQAIPPQSFQLQSGQTIQTIQQQPLQNVQLQAVNPTQVLIRAPTLTPS 463

  Fly   607 ----------QNI-TISRISMQTAPKAQ----SKPSTTSPTPASQPIPV---------------S 641
                      ||| ::|.:.:|.|..:|    :..|::..|..:|..||               |
  Rat   464 GQISWQTVQVQNIQSLSNLQVQNAGLSQQLTITPVSSSGGTTLAQIAPVAVAGAPITLNTAQLAS 528

  Fly   642 VPALSQAQPPPLAAQHKKIVRKP-------PENQDTSGQKVKAAR-------------------P 680
            ||.|.......|.|...::...|       .:.|...|.||:.|.                   .
  Rat   529 VPNLQTVSVANLGAAGVQVQGVPVTITSVAGQQQGQDGVKVQQATIAPVTVAVGGIANATIGAVS 593

  Fly   681 PQQILPSPQQEGQNATHSGSEAPTTSG-------LICPTCK--------REFKKKEHLTQHVKLH 730
            |.|:.....|:||..    |:|....|       ..||.|:        ...|||:|:       
  Rat   594 PDQLTQVHLQQGQQT----SDAEVQPGKRLRRVACSCPNCREGEGRGSSEPGKKKQHV------- 647

  Fly   731 AGLRPFKCSEEGCDKTFSRKEHLSRHLVSHSGQKMYTCE--VCKKPFSRKDNLNKHRRIHTQTST 793
                   |..|||.|.:.:..||..||..|:|::.:.|.  .|.|.|:|.|.|.:|||.||   .
  Rat   648 -------CHIEGCGKVYGKTSHLRAHLRWHTGERPFICNWMFCGKRFTRSDELQRHRRTHT---G 702

  Fly   794 ETLYCCDVCNKNFATKLHYEKHREMHKKIRPESAAPGATASPAAAPALTHV-------------- 844
            |..:.|..|:|.|....|..||.:.|:..:....|.....|.....::|.|              
  Rat   703 EKRFECPECSKRFMRSDHLSKHVKTHQNKKGGGTALAIVTSGELDSSVTEVLGSPRIVTVAAISQ 767

  Fly   845 RSNGQVPN 852
            .||...||
  Rat   768 DSNPATPN 775

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
padNP_650534.2 zf-AD 16..87 CDD:214871
C2H2 Zn finger 710..730 CDD:275368 7/27 (26%)
zf-C2H2 736..760 CDD:278523 9/23 (39%)
C2H2 Zn finger 738..760 CDD:275368 9/21 (43%)
zf-H2C2_2 752..777 CDD:290200 10/26 (38%)
zf-C2H2 766..788 CDD:278523 10/23 (43%)
C2H2 Zn finger 768..788 CDD:275368 10/21 (48%)
zf-H2C2_2 780..808 CDD:290200 11/27 (41%)
C2H2 Zn finger 799..819 CDD:275368 7/19 (37%)
Sp4NP_036893.1 C2H2 Zn finger 648..670 CDD:275368 9/21 (43%)
COG5048 <661..732 CDD:227381 27/73 (37%)
zf-H2C2_2 662..689 CDD:290200 10/26 (38%)
C2H2 Zn finger 678..700 CDD:275368 10/21 (48%)
zf-H2C2_2 692..715 CDD:290200 10/25 (40%)
zf-C2H2 706..728 CDD:278523 7/21 (33%)
C2H2 Zn finger 708..728 CDD:275368 7/19 (37%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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