DRSC/TRiP Functional Genomics Resources

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Protein Alignment pad and Zscan21

DIOPT Version :9

Sequence 1:NP_650534.2 Gene:pad / 41981 FlyBaseID:FBgn0038418 Length:924 Species:Drosophila melanogaster
Sequence 2:NP_001038168.1 Gene:Zscan21 / 22697 MGIID:99182 Length:555 Species:Mus musculus


Alignment Length:595 Identity:117/595 - (19%)
Similarity:209/595 - (35%) Gaps:167/595 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   339 LSSLAGPQSTTNLLSPNKCFLPITI-RDENSDQ------------QIVAHIDTKNLVLPTTYQVQ 390
            ::::.||:.....:.|:    ||.: .||..|:            :...:.||...:.|:|.:.:
Mouse     7 MATVLGPRPPQESMGPS----PIKVEEDEEKDKCCPTLELSHKHFRQSGNQDTLEPMGPSTIKAE 67

  Fly   391 M-----KLQPQLATAD--------GQPIMQLTPTSIPATLQLTPQTLGNPGSAFQGTTVTQNQFL 442
            .     |.:|.|..:.        ...:.||.|::|.|. :...:..|:|     ...:::.:|.
Mouse    68 EDESKDKCRPNLEISRKSFKQFGYQDTLEQLGPSTIKAE-EDDEKDKGHP-----SPEISRQRFR 126

  Fly   443 --------APQQPLTQL---------PNTAQVTSQQIIRSPHTSTTNSQLVIRNVTNIPPTPT-- 488
                    .|::.|:||         |...  |.:||:         ..||:.....|.|...  
Mouse   127 QFGYHDTPGPREALSQLRVLCCEWLQPEIH--TKEQIL---------ELLVLEQFLTILPRELQT 180

  Fly   489 -----TPTSSKKA-------------PTFKTPSPKQKPMPSPKSKTTVGPSSGGSNGTSTN---- 531
                 .|.|:::|             |..:..||..:...|.:..:|.|.:....:.|.|.    
Mouse   181 WVQQHCPESAEEAVTLLEDLEQELDEPGLQVSSPPNEQKQSWEKMSTSGTAMESLSSTETQHVDA 245

  Fly   532 ----EF-----------KRLITQT-------KPQPQVKQQQTAGLSASGAPTATSANQAAMQRLS 574
                ||           :.:.||.       |..||.:.......|:.....|....:..:..:.
Mouse   246 SPKYEFWGPLYIQETGEEEVFTQDPRKRQGFKSNPQKEDSADEHRSSEEESHADGLKRTVIPMIP 310

  Fly   575 SNTTITKVPKQPASLPAPAPTSNPAKLPMLNKQNITISRISMQ-TAPKAQSKPSTTSPTPASQPI 638
            :|...::..:|.|:                |.:....::.|:| |..:..::|::|.|.|..:..
Mouse   311 ANKYGSRSERQWAN----------------NLERERGTKASLQDTGSRKGAEPASTRPAPGEKRY 359

  Fly   639 PVSVPALSQAQPPPLAAQHKKIVRKPPENQDTSGQKV------------------------KAAR 679
            ..:....:.:....|....:....:.|......|:..                        ||..
Mouse   360 ICAECGKAFSNSSNLTKHRRTHTGEKPYVCTKCGKAFSHSSNLTLHYRTHLVDRPYDCKCGKAFG 424

  Fly   680 PPQQILPSPQQEGQNATHSGSEAPTTSGLICPTCKREFKKKEHLTQHVKLHAGLRPFKCSEEGCD 744
            ....:|...:...:.|.:.           |..|.:.|..|..|.:|.::|.|.:|::|:|  |.
Mouse   425 QSSDLLKHQRMHTEEAPYQ-----------CKDCGKAFSGKGSLIRHYRIHTGEKPYQCNE--CG 476

  Fly   745 KTFSRKEHLSRHLVSHSGQKMYTCEVCKKPFSRKDNLNKHRRIHTQTSTETLYCCDVCNKNFATK 809
            |:||:...||.|...|:|:|.|.|:.|.|.|:...|.|||.||||   .|..|.|..|.|.|.:|
Mouse   477 KSFSQHAGLSSHQRLHTGEKPYKCKECGKAFNHSSNFNKHHRIHT---GEKPYWCSHCGKTFCSK 538

  Fly   810 LHYEKHREMH 819
            .:..||:.:|
Mouse   539 SNLSKHQRVH 548

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
padNP_650534.2 zf-AD 16..87 CDD:214871
C2H2 Zn finger 710..730 CDD:275368 6/19 (32%)
zf-C2H2 736..760 CDD:278523 9/23 (39%)
C2H2 Zn finger 738..760 CDD:275368 9/21 (43%)
zf-H2C2_2 752..777 CDD:290200 11/24 (46%)
zf-C2H2 766..788 CDD:278523 10/21 (48%)
C2H2 Zn finger 768..788 CDD:275368 9/19 (47%)
zf-H2C2_2 780..808 CDD:290200 14/27 (52%)
C2H2 Zn finger 799..819 CDD:275368 7/19 (37%)
Zscan21NP_001038168.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..74 12/70 (17%)
3 X 39 AA approximate tandem repeats 18..134 21/125 (17%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 102..133 5/36 (14%)
SCAN 118..230 CDD:128708 21/122 (17%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 204..243 8/38 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 263..354 17/106 (16%)
COG5048 <339..535 CDD:227381 51/211 (24%)
C2H2 Zn finger 361..381 CDD:275368 1/19 (5%)
C2H2 Zn finger 389..409 CDD:275368 1/19 (5%)
C2H2 Zn finger 419..436 CDD:275368 3/16 (19%)
C2H2 Zn finger 444..464 CDD:275368 6/19 (32%)
C2H2 Zn finger 472..492 CDD:275368 9/21 (43%)
C2H2 Zn finger 500..520 CDD:275368 9/19 (47%)
C2H2 Zn finger 528..548 CDD:275368 7/19 (37%)
zf-C2H2 528..548 CDD:333835 7/19 (37%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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