DRSC/TRiP Functional Genomics Resources

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Protein Alignment pad and Sp4

DIOPT Version :9

Sequence 1:NP_650534.2 Gene:pad / 41981 FlyBaseID:FBgn0038418 Length:924 Species:Drosophila melanogaster
Sequence 2:NP_033265.4 Gene:Sp4 / 20688 MGIID:107595 Length:782 Species:Mus musculus


Alignment Length:799 Identity:181/799 - (22%)
Similarity:291/799 - (36%) Gaps:185/799 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   147 QQQYTITMDNGVQQQQQQHQAMPEVQIKSERQTALEEFIRLKPDIKITPLGKKEPISPAKPQQQH 211
            |||..|....|:.|.|.|.|.: |:........|.:......|..|...:.:....|.:.....:
Mouse    67 QQQIIIDPSQGLVQLQNQPQQL-ELVTTQLAGNAWQLVASTPPASKENNVSQPASSSSSSSSSNN 130

  Fly   212 SLQSQTVTPTINPTQ------LQLQPQLGD---QLQPLWQQIQQLQLQ------QQLQQLTNQLQ 261
            ...|.|.|.:.||:.      :|:|...|.   |:.|..|.::..|:|      ..||.|..|:|
Mouse   131 GSSSPTKTKSGNPSTPNQFQVIQVQNPSGSVQYQVIPQLQTVEGQQIQINPTSSSSLQDLQGQIQ 195

  Fly   262 ----ATTQYSVAQDDTSSSGDSKKPKLNFVLSSPTAPQFTTSMPQFGGSQPQIQLQLMPGS---- 318
                ...|..:...:.::||:        :|:...|.|......:.|.|.| :|||.:||:    
Mouse   196 LISAGNNQAILTAANRTASGN--------ILAQNLANQTVPVQIRPGVSIP-LQLQTLPGTQAQV 251

  Fly   319 --------GGVTSAGTVPAQTQLNAAALLSSLAGPQSTTN---------LLSPNKCFLPITIRDE 366
                    ||||.|  :|....:.|......:..|.:||:         :.:|.....|.:...|
Mouse   252 VTTLPINIGGVTLA--LPVINNVTAGGGTGQVGQPTTTTDSGTSNGNQLVSTPTTSTAPASTMPE 314

  Fly   367 N----------------SDQQIVAHIDTKNLVLPTTYQVQMKLQ----PQLATADGQPIMQLTPT 411
            :                |...:|:..||......:....:..::    |....::.|...||...
Mouse   315 SPSSSTTCTTTASTTLTSSDTLVSSADTGQYASTSASSSERTIEEPQTPAATESEAQSSSQLQSN 379

  Fly   412 SI------PATLQLTPQTLGNPGSAFQGTTVTQNQFLAPQQPLTQL--PNTAQVTSQQIIRSPHT 468
            .|      ..:||.. |.:|.|       .:.|.|...|||.:.|.  |.:.|:.|.|.|:    
Mouse   380 GIQNAQDQSNSLQQV-QIVGQP-------ILQQIQIQQPQQQIIQAIPPQSFQLQSGQTIQ---- 432

  Fly   469 STTNSQLVIRNVTNIPPTPTTPTSSKKAPTFKTPSPKQKPMPSPKSKTTVGPSSGGSNGTSTNEF 533
              |..|..::||......||....  :|||. |||                    |.....|.:.
Mouse   433 --TIQQQPLQNVQLQAVNPTQVLI--RAPTL-TPS--------------------GQISWQTVQV 472

  Fly   534 KRLITQTKPQPQVKQQQTAGLSASGAPTATSANQAAMQRLSSNTTITKV-PKQPASLPAPAPTSN 597
            :.:  |:....||   |.||||.....|..|:        |..||:.:: |...|..|....|:.
Mouse   473 QNI--QSLSNLQV---QNAGLSQQLTITPVSS--------SGGTTLAQIAPVAVAGAPITLNTAQ 524

  Fly   598 PAKLPMLNKQNITISRISMQTAPKAQSKPSTTSPTPASQ--------------PIPVSVPALSQA 648
            .|.:|  |.|.::::.:. ....:.|..|.|.:.....|              |:.|:|..::.|
Mouse   525 LASVP--NLQTVSVANLG-AAGVQVQGVPVTITSVAGQQQGQDGVKVQQATIAPVTVAVGGIANA 586

  Fly   649 -----QPPPLAAQHKKIVRKPPENQDTSGQKVKAARPPQQILPS----PQQEGQNATHSGSEAPT 704
                 .|..|...|.:      :.|.||..:|:..:..:::..|    .:.||:.::..|.:...
Mouse   587 TIGAVSPDQLTQVHLQ------QGQQTSDAEVQPGKRLRRVACSCPNCREGEGRGSSEPGKKKQH 645

  Fly   705 TSGLIC--PTCKREFKKKEHLTQHVKLHAGLRPFKCSEEGCDKTFSRKEHLSRHLVSHSGQKMYT 767
                :|  ..|.:.:.|..||..|::.|.|.|||.|:...|.|.|:|.:.|.||..:|:|:|.:.
Mouse   646 ----VCHIEGCGKVYGKTSHLRAHLRWHTGERPFICNWMFCGKRFTRSDELQRHRRTHTGEKRFE 706

  Fly   768 CEVCKKPFSRKDNLNKHRRIHTQTSTETLYCCDVCNKNFATKLHYEKHREMHKKIRPESAAPG-- 830
            |..|.|.|.|.|:|:||.:.|..            .|...|.|......|:...:.....:|.  
Mouse   707 CPECSKRFMRSDHLSKHVKTHQN------------KKGGGTALAIVTSGELDSSVTEVLGSPRIV 759

  Fly   831 --ATASPAAAPALTHVRSN 847
              |..|..:.||..:|.:|
Mouse   760 TVAAISQDSNPATPNVSTN 778

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
padNP_650534.2 zf-AD 16..87 CDD:214871
C2H2 Zn finger 710..730 CDD:275368 6/21 (29%)
zf-C2H2 736..760 CDD:278523 9/23 (39%)
C2H2 Zn finger 738..760 CDD:275368 8/21 (38%)
zf-H2C2_2 752..777 CDD:290200 10/24 (42%)
zf-C2H2 766..788 CDD:278523 9/21 (43%)
C2H2 Zn finger 768..788 CDD:275368 9/19 (47%)
zf-H2C2_2 780..808 CDD:290200 5/27 (19%)
C2H2 Zn finger 799..819 CDD:275368 4/19 (21%)
Sp4NP_033265.4 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..48
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 107..148 8/40 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 275..385 15/109 (14%)
9aaTAD, inactive. /evidence=ECO:0000250|UniProtKB:Q02446 465..473 1/7 (14%)
C2H2 Zn finger 647..669 CDD:275368 6/21 (29%)
COG5048 <660..731 CDD:227381 29/82 (35%)
zf-H2C2_2 661..688 CDD:290200 12/26 (46%)
C2H2 Zn finger 677..699 CDD:275368 8/21 (38%)
zf-H2C2_2 691..714 CDD:290200 9/22 (41%)
zf-C2H2 705..727 CDD:278523 9/21 (43%)
C2H2 Zn finger 707..727 CDD:275368 9/19 (47%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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