DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pad and sp4

DIOPT Version :10

Sequence 1:NP_650534.2 Gene:pad / 41981 FlyBaseID:FBgn0038418 Length:924 Species:Drosophila melanogaster
Sequence 2:XP_002933342.2 Gene:sp4 / 100494434 XenbaseID:XB-GENE-983118 Length:775 Species:Xenopus tropicalis


Alignment Length:825 Identity:186/825 - (22%)
Similarity:292/825 - (35%) Gaps:231/825 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   112 GKSLSVAQSAPPV--PNGAQQSG------NLLNSIIQAVNMQPQQ-----------QYTITMDNG 157
            |.:..:..:||||  .|...|.|      ...:|.|.:.|..|.:           |:.:     
 Frog    89 GSAWQIVAAAPPVSKENNITQQGVAIAASTAASSSINSENASPTKSKPSNAATAPGQFQV----- 148

  Fly   158 VQQQ----QQQHQAMPE--------VQIKSERQTALEEFIRLKPDIKITPLGKKEPISPAKPQQ- 209
            :|.|    ..|:|.:|:        :||.....|||::   |:..|:..|.|..:.|..|..:. 
 Frog   149 IQVQTPGGNVQYQVIPQIQTVEGQHIQISPGNTTALQD---LQGQIQFIPAGNNQAIITAGNRTA 210

  Fly   210 -----QHSLQSQTVTPTINP---TQLQLQPQLGDQLQPLWQQIQQLQLQQQLQQLT------NQL 260
                 ..:|.:|||...|.|   ..||||...|...|.:      ..|...:..:|      |.:
 Frog   211 SGNIIAQNLANQTVPVQIRPGVSIPLQLQTIPGAPAQVV------TTLPINIGGVTLALPVINSM 269

  Fly   261 QA---TTQYSVAQDDTSSSGDSKKPKLNFVLSSPTAPQFTTSMPQFGGSQPQIQLQLMPGSGGVT 322
            .|   :.|.....|...|:|       |.:||:|......::||:            .|.|...:
 Frog   270 PAGGGSAQIVQPTDGGVSNG-------NQLLSTPITTSSVSTMPE------------SPSSSSSS 315

  Fly   323 SAGTVPAQTQLNAAALLSSLAGPQSTTNLLSP--NKCFLPITIRD---ENSDQQIVAHIDTKNLV 382
            :..|..:.|..::..|:||....|.|:...|.  |....|.::.|   ::|:|.....:...:..
 Frog   316 TCTTTVSATLTSSDTLVSSAETNQYTSTSASAERNTEESPSSVTDGEAQSSNQLQSNGLQNMSEQ 380

  Fly   383 LPTTYQVQMKLQPQLATADGQPIMQLTPTSIP--ATLQLTPQTLGNPGSAFQ---GTTVTQNQFL 442
            ..:..|||:.         |||::|......|  ..:|..||      .:||   |.|:...|  
 Frog   381 SNSLQQVQIV---------GQPVLQQIQIQQPQQQIIQAIPQ------QSFQLQSGQTIQTLQ-- 428

  Fly   443 APQQPLTQLPNTAQVTSQQIIRSPHTSTTNSQL-----VIRNVTNI-------PPTP----TTPT 491
              ||.|..:...|...:|.:||:| |.|.:.|:     .::|:.::       |..|    .||.
 Frog   429 --QQQLQNVQLQALSPTQVLIRAP-TLTPSGQISWQTVQVQNIQSLQNLQVQNPGLPQQLTLTPV 490

  Fly   492 SSKKAPTFKTPSPKQKPMPSPKSKTTVGPSSGGSNGTSTNEFKRLITQTKPQPQVKQQQTAGLSA 556
            |:....|....:|           .||..:....|.........|.|.:     |.....||:..
 Frog   491 STSSGTTIAQIAP-----------VTVAGTPITLNAAHFTSVPNLQTVS-----VANLGAAGVQV 539

  Fly   557 SGAPTATSANQAAMQRLSSNTTITKVPKQPASLPAPAPTSNPAKLPMLNKQNITISRISMQTAPK 621
            .|.|                .|||.|..|......            :..|..||:.:::.....
 Frog   540 QGVP----------------VTITSVGGQQQGAEG------------VKVQQATIAPVTVAVGGI 576

  Fly   622 AQSKPSTTSPTPASQPIPVSVPALSQAQPPPLAAQHKKIVRKPPENQDTSGQKVKAARPPQQILP 686
            |.:.....||...:|      ..|.|:||                   :|.|:|:..:..:::..
 Frog   577 ANATIGAVSPDQLTQ------VQLQQSQP-------------------SSDQEVQTGKRLRRVAC 616

  Fly   687 S-PQ-QEGQNATHSGSEAPTTSGLIC--PTCKREFKKKEHLTQHVKLHAGLRPFKCSEEGCDKTF 747
            | |. :||:.  ...||.......||  ..|.:.:.|..||..|::.|.|.|||.|:...|.|.|
 Frog   617 SCPNCREGEG--RGNSEPGKKKQHICHIENCGKVYGKTSHLRAHLRWHTGERPFVCNWIFCGKRF 679

  Fly   748 SRKEHLSRHLVSHSGQKMYTCEVCKKPFSRKDNLNKHRRIHTQTSTETLYCCDVCNKNFATKLHY 812
            :|.:.|.||..:|:|:|.:.|..|.|.|.|.|:|:||.:.|..            .|...|.|..
 Frog   680 TRSDELQRHRRTHTGEKRFECPECSKRFMRSDHLSKHVKTHQN------------KKGGGTALAI 732

  Fly   813 EKHREMHKKIRPESAAPGATASP----AAA------PALTHVRSN 847
            ....::      :|:..|...||    .||      ||..:|.:|
 Frog   733 VTSGDL------DSSVTGVLGSPRIVTVAAISQDSNPATPNVSTN 771

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
padNP_650534.2 zf-AD 16..88 CDD:462262
PHA03247 <497..709 CDD:223021 37/213 (17%)
C2H2 Zn finger 710..730 CDD:275368 6/21 (29%)
zf-C2H2 736..760 CDD:395048 9/23 (39%)
C2H2 Zn finger 738..760 CDD:275368 8/21 (38%)
zf-C2H2 766..788 CDD:395048 9/21 (43%)
C2H2 Zn finger 768..788 CDD:275368 9/19 (47%)
zf-C2H2 797..819 CDD:395048 3/21 (14%)
C2H2 Zn finger 799..819 CDD:275368 3/19 (16%)
sp4XP_002933342.2 SP4_N 22..639 CDD:411773 140/673 (21%)
zf-C2H2 638..662 CDD:395048 7/23 (30%)
C2H2 Zn finger 640..662 CDD:275368 6/21 (29%)
zf-H2C2_2 654..681 CDD:463886 12/26 (46%)
C2H2 Zn finger 670..692 CDD:275368 8/21 (38%)
zf-H2C2_2 684..707 CDD:463886 9/22 (41%)
zf-C2H2 698..720 CDD:395048 9/21 (43%)
C2H2 Zn finger 700..720 CDD:275368 9/19 (47%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.