DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment mtSSB and OSB1

DIOPT Version :9

Sequence 1:NP_536744.2 Gene:mtSSB / 41968 FlyBaseID:FBgn0010438 Length:146 Species:Drosophila melanogaster
Sequence 2:NP_175203.2 Gene:OSB1 / 841183 AraportID:AT1G47720 Length:261 Species:Arabidopsis thaliana


Alignment Length:138 Identity:26/138 - (18%)
Similarity:47/138 - (34%) Gaps:46/138 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 HTRRMLNPLLTGLR-NLPARGATTTTAAAPAKVEKTVNTVTILGRVGADPQLRGSQEHPVVTFSV 66
            |.|....||.|.|: ||                   ||:|:::|.|....|:..:.......|::
plant    38 HARLFKKPLSTKLKFNL-------------------VNSVSLMGFVDRSIQVMNTGPDRFGVFTI 83

  Fly    67 ATHTNYKYENGDWAQRTDWHRVVVFKPNLR------DTVLEYLKKGQRTMVQGKITYGEITDQQG 125
            ....:....|..            |:.:||      .|.:.:||.....:|.|::        :.
plant    84 LRVKDPLNPNRS------------FRISLRMWDAMARTCIAHLKLNDHILVSGRL--------ES 128

  Fly   126 NQKTSTSI 133
            ..|:|:.:
plant   129 YSKSSSDV 136

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mtSSBNP_536744.2 SSB 38..141 CDD:278844 18/102 (18%)
Ssb 38..>140 CDD:223702 18/102 (18%)
OSB1NP_175203.2 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10302
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.100

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