DRSC/TRiP Functional Genomics Resources

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Protein Alignment mtSSB and AT3G18580

DIOPT Version :9

Sequence 1:NP_536744.2 Gene:mtSSB / 41968 FlyBaseID:FBgn0010438 Length:146 Species:Drosophila melanogaster
Sequence 2:NP_188488.1 Gene:AT3G18580 / 821389 AraportID:AT3G18580 Length:217 Species:Arabidopsis thaliana


Alignment Length:90 Identity:26/90 - (28%)
Similarity:42/90 - (46%) Gaps:10/90 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    43 ILGRVGADP-QLRGSQEHPVVTFSVAT---HTNYK----YENGDWAQRT--DWHRVVVFKPNLRD 97
            ::|:||..| |.:......|..|||.|   ..|.:    .:..::|.|:  .||||.|:...|.|
plant    85 LVGQVGQLPLQKKLKSGRTVTLFSVGTGGIRNNRRPLINEDPREYASRSAVQWHRVSVYPERLAD 149

  Fly    98 TVLEYLKKGQRTMVQGKITYGEITD 122
            .||:.::.|....::|.:.....||
plant   150 LVLKNVEPGTVIYLEGNLETKIFTD 174

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mtSSBNP_536744.2 SSB 38..141 CDD:278844 26/90 (29%)
Ssb 38..>140 CDD:223702 26/90 (29%)
AT3G18580NP_188488.1 SSB 80..190 CDD:395349 26/90 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1304218at2759
OrthoFinder 1 1.000 - - FOG0004077
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_101436
Panther 1 1.100 - - O PTHR10302
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
54.920

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