DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG6006 and LOC303140

DIOPT Version :9

Sequence 1:NP_001097812.1 Gene:CG6006 / 41962 FlyBaseID:FBgn0063649 Length:603 Species:Drosophila melanogaster
Sequence 2:XP_008765965.1 Gene:LOC303140 / 303140 RGDID:1561735 Length:555 Species:Rattus norvegicus


Alignment Length:527 Identity:158/527 - (29%)
Similarity:269/527 - (51%) Gaps:42/527 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    83 DVIGDLMGHYGKWQLLMTVLLSLFQVPNTFHISSSIYQAANKDFWCQRPAQLQHMPVATWRNLSG 147
            |.:...:|.:|.:|.|:..|||...:||.|...|:::..|:.:..|..|..:...  :.|||.|.
  Rat     5 DELTAFLGEWGPFQRLIFFLLSASIIPNGFTGLSAVFLTASPEHRCLVPDTVNLS--SAWRNHSI 67

  Fly   148 SVD---------NCRRWEGIDWSQVSNETTLPSDWKTPAE-MDKKLVACEK----WEYETNDNVG 198
            .::         .|||:.   .:.::|.:.|..:   |.| :|.|.:..|.    ||| :.:...
  Rat    68 PLEMKDGRQVPHKCRRYR---LATIANFSALGLE---PGEDVDLKQLELENCLDGWEY-SKEVFL 125

  Fly   199 NTWTSQWDLVCEKEHLKNVAEMFFLLGVATGGIISGYLSDKFGRKTMLFISAVLQTIFGLWLYIC 263
            :|..::|:|||.......:....|.:||..|..|||.|||:||||.:||.:..:.|.|.......
  Rat   126 STIVTEWNLVCNDAWKAPLTTSMFYVGVLLGSFISGQLSDRFGRKPVLFWTMGMHTGFSFLQVFS 190

  Fly   264 SSFELYLTLRALLGLVSVSVTYSGLILAIEYVDGKWRTI---AGMYNLFPLPISYMIISGLAYLT 325
            .:||::..|.||:|:..:|...:..:|..|.:....|.|   .|:...|  ...:|::...||..
  Rat   191 VNFEMFTLLFALVGMGHISNYVAAFVLGTEILSKSIRIIFATLGICIFF--AFGFMVLPLFAYFI 253

  Fly   326 QDYQRLQLCIGIPGIFLCFLWFVVPESPRWLLVKGRIDEVRRIIEAAAKFNGRQLPADYQLTPPT 390
            :|::.|.:.|.:||:....||:.:|||||||:.:||:.|...||..||||||...|:  .:..|:
  Rat   254 RDWRMLLMAITLPGVLCGALWWFIPESPRWLISQGRVKEAEVIIRKAAKFNGIVAPS--TIFDPS 316

  Fly   391 QESSTQD----------VTYLFRSSYLRRISICFFCIWFTMNLVYYGIILNMSSFGGNVYLNSAL 445
            :.::.||          :..|.|:..:|.::|....:|.|:::.|:|:.|:..:..||:|:|..|
  Rat   317 ETTNLQDGNAKNTQSHHIYDLVRTRNIRILTIMSIILWLTISVGYFGLSLDTPNLNGNIYVNGFL 381

  Fly   446 AGLVEIPAIAVAMYIITKVGKKWLFCATLICAGVACCCAAITEGHADLLWLKITFLMMGKFTISA 510
            ...||:||..:|..::..|.:::....:|...|.......:..  :|||:|....:|:|||.|::
  Rat   382 LAAVEVPAYVLAWLLLQHVTRRYSMAGSLFLGGSVLLILQLVP--SDLLYLSTALVMVGKFGITS 444

  Fly   511 GNTIMPVYTAELYPTPIRNVGVGACNVAAGLALILTPYLSLLNKIEGHLLMTLLTAWSIFGGFVV 575
            ..:::.|||||||||.:||:|||..:.|:.|..||:||...|...:.||...::.:.:|....:.
  Rat   445 AYSMVYVYTAELYPTVVRNMGVGVSSTASRLGSILSPYFVYLGAYDRHLPYIVMGSLTILTAIIT 509

  Fly   576 LFLPETA 582
            .|.||::
  Rat   510 FFFPESS 516

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6006NP_001097812.1 2A0119 90..581 CDD:273328 156/517 (30%)
MFS 222..579 CDD:119392 119/369 (32%)
LOC303140XP_008765965.1 2A0119 12..523 CDD:273328 157/520 (30%)
MFS 123..513 CDD:119392 124/395 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D386678at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

Return to query results.
Submit another query.