DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG6006 and svop-1

DIOPT Version :10

Sequence 1:NP_001097812.1 Gene:CG6006 / 41962 FlyBaseID:FBgn0063649 Length:603 Species:Drosophila melanogaster
Sequence 2:NP_498960.2 Gene:svop-1 / 176250 WormBaseID:WBGene00014021 Length:520 Species:Caenorhabditis elegans


Alignment Length:520 Identity:124/520 - (23%)
Similarity:200/520 - (38%) Gaps:129/520 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   158 IDWSQVSNETTL--PSDWKTPAEMDKKLVACE--------KWEYETNDNVGNTWTSQW------- 205
            :.:|.:.:.|.|  |:|.::| :.:|.....|        :::.:.:...|..|.:..       
 Worm    41 VRYSNLDDRTELGEPTDQRSP-DSEKTFTVDEAVEALGFGRFQLKLSILTGMAWMADAMEMMLLS 104

  Fly   206 ----DLVCEKEHLKNVAEMFFLLGVATGGIIS----GYLSDKFGRKTMLFISAVLQTIFGLWLYI 262
                .|.|| ..:.:|.:......|.:|.::|    |.:.|:|||:..|..|.::..|.|:...:
 Worm   105 LISPALACE-WGISSVQQALVTTCVFSGMMLSSTFWGKICDRFGRRKGLTFSTLVACIMGVISGM 168

  Fly   263 CSSFELYLTLRALLGL----VSVSVTYSGLIL-------AIEYVDGKWRTIAGMYNLFPLPISYM 316
            ...|.:.|..|.|.|.    |..|||.....|       .:..::..|...|    :|...::|.
 Worm   169 SPHFYVLLFFRGLTGFGIGGVPQSVTLYAEFLPTAQRAKCVVLIESFWAIGA----VFEALLAYF 229

  Fly   317 IISGLAYLTQDYQRLQLCIGIP-GIF-LCFLWFVVPESPRWLLVKGRIDEVRRIIEAAAKFNGRQ 379
            ::....     ::.|.....:| ||| :...|  :|||.|:.:..|..:.....::|||:.|..|
 Worm   230 VMESFG-----WRALMFLSSLPLGIFAVASFW--LPESARFDMASGHPERALETLQAAARMNRVQ 287

  Fly   380 LPADYQLTPPTQESSTQ--DVTYLFRSSYLRRISICFFCIWFTMNLVYYGIIL--------NMSS 434
            ||.. :|...|:..|..  |:..|. |..||:.:|..:|||......|||::|        :...
 Worm   288 LPTG-RLVSSTKAGSESRGDIANLL-SPDLRKTTILLWCIWAITAFSYYGMVLFTTVLFQSHDEC 350

  Fly   435 FGG----------------NVYLNSALAGLVEIPAIAVAMYIITKVGKKWLFCATLICAGVACCC 483
            .||                :.|.:.....|.|.|.:.:.:.||...|:|...........:    
 Worm   351 HGGLFSNGTQMEVCQPLTRSDYFDLLSTTLAEFPGLIITVLIIEWFGRKKTMALEYAVFAI---- 411

  Fly   484 AAITEGHADLLWLKITFLM---MGKFT-----------ISAGNTIMPVYTAELYPTPIRNVGVGA 534
                          .|||:   :.:||           ||.......|||.|:|||.:|.||:|.
 Worm   412 --------------FTFLLYFCLDRFTVTVLIFVARAFISGAFQCAYVYTPEVYPTTLRAVGLGT 462

  Fly   535 CNVAAGLALILTPY---------LSLLNKIEGHLLMTLLTAWSIFGGFVVLFLP-ETAVRQKTDN 589
            |:..|.:..|:||:         |||...|.|       || :|.|....|.|| ||..||..|:
 Worm   463 CSAMARIGAIVTPFIAQVASEKSLSLPIGIYG-------TA-AILGLIASLSLPIETKGRQMMDS 519

  Fly   590  589
             Worm   520  519

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6006NP_001097812.1 MFS_SLC22 189..579 CDD:340875 109/466 (23%)
svop-1NP_498960.2 MFS_SVOP 86..508 CDD:340999 109/461 (24%)

Return to query results.
Submit another query.