DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG6006 and sv2b

DIOPT Version :9

Sequence 1:NP_001097812.1 Gene:CG6006 / 41962 FlyBaseID:FBgn0063649 Length:603 Species:Drosophila melanogaster
Sequence 2:XP_002933355.1 Gene:sv2b / 100497731 XenbaseID:XB-GENE-6041859 Length:711 Species:Xenopus tropicalis


Alignment Length:620 Identity:114/620 - (18%)
Similarity:195/620 - (31%) Gaps:215/620 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   167 TTLPSDWKTPAEMDKKLVACEK---WEYETNDNVGNTWTSQWDL--------------------- 207
            :::..::|.||::..:.:..|:   ::||...........||.|                     
 Frog    96 SSIRDEFKDPADIIAERIEDEEQLAYQYENIIQECGHGRFQWTLFVVLGLALMADGVEVFVVGFV 160

  Fly   208 -------VCEKEHLKNVAEMFFLLGVATGGIISGYLSDKFGRKTMLFISAVLQTIFGLWLYICSS 265
                   :|.....|.:..:...||:..|..:.|.|:||.|||..|.||..:...|.........
 Frog   161 LPSAEKDMCLSRSNKGMLGLIVYLGMMLGAFVWGGLADKVGRKKCLIISLTINAAFSFVSSFVQG 225

  Fly   266 FELYLTLRALLGL-----VSVSVTYSGLILAIE------------YVDGKWRTIAGMYNLFPLPI 313
            :.|:|..|.:.|.     :.:...|....||.|            ::.|.....|..:::.| ..
 Frog   226 YGLFLFCRLISGFGIGGSLPIVFAYFSEFLAREKRGEHLSWLCMFWMIGAVYAAAMAWSIIP-HY 289

  Fly   314 SYMIISGLAYLTQDYQRLQLCIGIPGIFLCFLWFVVPESPRWLLVKGRIDEVRRIIE------AA 372
            .:....|..|....::...:...:|.|........:|||||:||..|:.||...|::      ..
 Frog   290 GWGFSMGTHYHFHSWRVFVVICVLPCIASIIALKFMPESPRFLLETGKHDEAWMILKNIHDTNMR 354

  Fly   373 AKFNGRQLPADYQLTPPTQ-------ESST-------------------QDVTYLFRSSYLRRIS 411
            ||....::.....:..|.|       :|||                   :::.:.| |...|:.:
 Frog   355 AKGEPEKVFTVSHIKTPKQPDEFIEIQSSTGTWFQRWFVRIMTVIKQIWENMLHCF-SGQFRKNT 418

  Fly   412 ICFFCIWFTMNLVYYGIIL------------------------NMSSFGGN-------------- 438
            |....:||||:|.|||:.:                        |:.:|..|              
 Frog   419 IFLAVVWFTMSLSYYGLTVWFPDTIRYLQDEDYASKVKRFTDENVKNFNFNFTLENQIHEDGEYY 483

  Fly   439 ----------------------------------------------------------------- 438
                                                                             
 Frog   484 NDRFYKMKLKYVTFKDSLFDECYFEDVTSTGSIFENCTIQNTVFYNTDLYQHKFIDCNFINVTFS 548

  Fly   439 -----------------VYLNSALAGLVEIPAIAVAMYIITKVGKKWLFCATLICAGVACCCAAI 486
                             :||.|.|..|..:|...::..::.|:|:..:...:::.:.|  ||..:
 Frog   549 QPKEGCHIDFEEDNDFLIYLVSFLGSLSVLPGNIISALLMDKIGRIRMIAGSMLISAV--CCFFL 611

  Fly   487 TEGHADLLWLKITFLMMGKFTISAGNTIMPVYTAELYPTPIRNVGVGACNVAAGLAL-----ILT 546
            ..|:::...:....|..|. :|:|.|. :.|.|.|||||..|....|..|....||.     |..
 Frog   612 FFGNSESAMIGWQCLFCGT-SIAAWNA-LDVVTVELYPTNKRATAFGILNGLCKLAAIFGNSIFA 674

  Fly   547 PYLSLLNKIEGHLLMTLLTAWSIFGGFVVLFLPET 581
            .::.:...|...|..|.|    :.||.:.|.||||
 Frog   675 SFVGITKVIPILLASTAL----VGGGLISLRLPET 705

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6006NP_001097812.1 2A0119 90..581 CDD:273328 112/618 (18%)
MFS 222..579 CDD:119392 99/530 (19%)
sv2bXP_002933355.1 synapt_SV2 1..711 CDD:130366 114/620 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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