DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Fer2 and Neurog2

DIOPT Version :9

Sequence 1:NP_001287359.1 Gene:Fer2 / 41961 FlyBaseID:FBgn0038402 Length:283 Species:Drosophila melanogaster
Sequence 2:XP_008759703.1 Gene:Neurog2 / 295475 RGDID:1309061 Length:263 Species:Rattus norvegicus


Alignment Length:159 Identity:49/159 - (30%)
Similarity:68/159 - (42%) Gaps:51/159 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    97 GGGAPLMCN-SPSASSS-----------GGGCGNAGS--------ATPGGAGGPNPG--YGSV-- 137
            |..:|.... :|.:||:           |...|..|:        ::..||||..||  .|.|  
  Rat    21 GSASPASATLTPMSSSADEEEDEELRRPGAARGQRGAEAGQGVQGSSASGAGGCRPGRLLGLVHE 85

  Fly   138 -------------GAATASSY----KMQRQAANVRERKRIQRSAPTGYTKCSINSAFDELRVHVP 185
                         ||.||.:.    |.:|..||.|||.|:.          ::|:|.|.||..:|
  Rat    86 CKRRPSRARAVSRGAKTAETVQRIKKTRRLKANNRERNRMH----------NLNAALDALREVLP 140

  Fly   186 TFPYEKRLSKIDTLRLAIAYISLLREVLQ 214
            |||.:.:|:||:|||.|..||..|.|.|:
  Rat   141 TFPEDAKLTKIETLRFAHNYIWALTETLR 169

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Fer2NP_001287359.1 HLH 148..210 CDD:278439 25/61 (41%)
Neurog2XP_008759703.1 HLH 110..169 CDD:238036 28/68 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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