DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Fer2 and Neurog1

DIOPT Version :10

Sequence 1:NP_001287359.1 Gene:Fer2 / 41961 FlyBaseID:FBgn0038402 Length:283 Species:Drosophila melanogaster
Sequence 2:NP_062080.1 Gene:Neurog1 / 29410 RGDID:3167 Length:244 Species:Rattus norvegicus


Alignment Length:152 Identity:44/152 - (28%)
Similarity:65/152 - (42%) Gaps:34/152 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    78 HSGENLLDSSTN--------PMGVHNSGGGAPLMCNSPSASSSGGGCGNAGSATPGGAGGPNPGY 134
            :||.:|....|:        |: ...||...|...::|:.|.:        |..|||........
  Rat    18 NSGSDLSSFLTDEEDCARLQPL-ASTSGLSVPARRSAPTLSGA--------SNVPGGQDEEQERR 73

  Fly   135 GSVGAATASS-------YKMQRQAANVRERKRIQRSAPTGYTKCSINSAFDELRVHVPTFPYEKR 192
            ...|.|...|       .:.:|..||.|||.|:.          ::|:|.|.||..:|:||.:.:
  Rat    74 RRRGRARVRSEALLHSLRRSRRVKANDRERNRMH----------NLNAALDALRSVLPSFPDDTK 128

  Fly   193 LSKIDTLRLAIAYISLLREVLQ 214
            |:||:|||.|..||..|.|.|:
  Rat   129 LTKIETLRFAYNYIWALAETLR 150

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Fer2NP_001287359.1 bHLH_SF 144..216 CDD:469605 28/78 (36%)
Neurog1NP_062080.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 43..84 11/48 (23%)
bHLH_TS_NGN1_NeuroD3 83..154 CDD:381559 28/78 (36%)

Return to query results.
Submit another query.