DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Fer2 and hlh-16

DIOPT Version :10

Sequence 1:NP_001287359.1 Gene:Fer2 / 41961 FlyBaseID:FBgn0038402 Length:283 Species:Drosophila melanogaster
Sequence 2:NP_492372.2 Gene:hlh-16 / 183973 WormBaseID:WBGene00001960 Length:146 Species:Caenorhabditis elegans


Alignment Length:86 Identity:26/86 - (30%)
Similarity:38/86 - (44%) Gaps:18/86 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   127 AGGPNPGYGSVGAATASSYKMQRQAANVRERKRIQRSAPTGYTKCSINSAFDELRVHVPTFPYE- 190
            |||.....|    .......:.|.:.|.|||:|:.          .:|..|:.||..:| :|.| 
 Worm    24 AGGRKKMQG----LNEQEQNLLRNSINSRERRRMH----------ELNDEFETLRECLP-YPNEA 73

  Fly   191 --KRLSKIDTLRLAIAYISLL 209
              :|:||.:||.||..:|..|
 Worm    74 NSRRMSKANTLLLASNWIKQL 94

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Fer2NP_001287359.1 bHLH_SF 144..216 CDD:469605 22/69 (32%)
hlh-16NP_492372.2 bHLH_TS 42..96 CDD:381396 22/64 (34%)

Return to query results.
Submit another query.