DRSC/TRiP Functional Genomics Resources

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Protein Alignment Fer2 and Msc

DIOPT Version :9

Sequence 1:NP_001287359.1 Gene:Fer2 / 41961 FlyBaseID:FBgn0038402 Length:283 Species:Drosophila melanogaster
Sequence 2:XP_011236650.1 Gene:Msc / 17681 MGIID:1333884 Length:217 Species:Mus musculus


Alignment Length:177 Identity:56/177 - (31%)
Similarity:81/177 - (45%) Gaps:39/177 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    66 NNLRHIQQHYMQHSGENLLDSSTNPMGVHNSGGGAPLMCNS---------PSASSSGGGC--GNA 119
            :.:|.:|:.|...:      |...|:.....|.|:|...:|         |.:..:.|||  ...
Mouse    12 SEMRGLQRVYPAPA------SKRPPLLRMERGYGSPSDISSAEEEDGEEEPGSLGAAGGCKRKRL 70

  Fly   120 GSATPGGAGG--------PNPGYGSVGAATASSYKMQRQAANVRERKRIQRSAPTGYTKCSINSA 176
            ..|..|||||        |.|..||    .|...:.||.|||.|||.|::          .::.|
Mouse    71 RGADAGGAGGRAGGAGKKPLPPKGS----AAECKQSQRNAANARERARMR----------VLSKA 121

  Fly   177 FDELRVHVPTFPYEKRLSKIDTLRLAIAYISLLREVLQTDYDPLTYV 223
            |..|:..:|..|.:.:|||:||||||.:||:.||::||.|....:||
Mouse   122 FSRLKTSLPWVPPDTKLSKLDTLRLASSYIAHLRQLLQEDRYEDSYV 168

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Fer2NP_001287359.1 HLH 148..210 CDD:278439 25/61 (41%)
MscXP_011236650.1 bHLH_TS_musculin 100..165 CDD:381546 30/74 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4029
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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