DRSC/TRiP Functional Genomics Resources

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Protein Alignment Fer2 and hlh-3

DIOPT Version :9

Sequence 1:NP_001287359.1 Gene:Fer2 / 41961 FlyBaseID:FBgn0038402 Length:283 Species:Drosophila melanogaster
Sequence 2:NP_495938.4 Gene:hlh-3 / 174447 WormBaseID:WBGene00001950 Length:170 Species:Caenorhabditis elegans


Alignment Length:76 Identity:26/76 - (34%)
Similarity:39/76 - (51%) Gaps:11/76 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   139 AATASSYKMQRQAANVRERKRIQRSAPTGYTKCSINSAFDELRVHVPTFPYEK-RLSKIDTLRLA 202
            ::.:|..|..:|..|.|||||:.:          :|..|..|:..||.....| :|||::|||.|
 Worm    18 SSKSSVTKQTKQKRNERERKRVDQ----------VNQGFVLLQERVPKAAGNKAKLSKVETLREA 72

  Fly   203 IAYISLLREVL 213
            ..||..|::.|
 Worm    73 ARYIQELQKQL 83

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Fer2NP_001287359.1 HLH 148..210 CDD:278439 22/62 (35%)
hlh-3NP_495938.4 HLH 32..83 CDD:197674 22/60 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4029
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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