DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Fer2 and ferd3l

DIOPT Version :9

Sequence 1:NP_001287359.1 Gene:Fer2 / 41961 FlyBaseID:FBgn0038402 Length:283 Species:Drosophila melanogaster
Sequence 2:XP_021323873.1 Gene:ferd3l / 110438133 -ID:- Length:145 Species:Danio rerio


Alignment Length:91 Identity:43/91 - (47%)
Similarity:55/91 - (60%) Gaps:17/91 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   131 NPGYGSVGAATASSYK-------MQRQAANVRERKRIQRSAPTGYTKCSINSAFDELRVHVPTFP 188
            :|..||...|.....|       :||||||:|||||:          .|:|.|||.||..||||.
Zfish    63 SPSTGSPEIAVNMKPKRKRVISTVQRQAANIRERKRM----------FSLNEAFDRLRRRVPTFA 117

  Fly   189 YEKRLSKIDTLRLAIAYISLLREVLQ 214
            ||||||:|:||||||.||:.:.::|:
Zfish   118 YEKRLSRIETLRLAIVYIAFMTDILE 143

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Fer2NP_001287359.1 HLH 148..210 CDD:278439 37/61 (61%)
ferd3lXP_021323873.1 HLH 87..139 CDD:306515 37/61 (61%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2562
SonicParanoid 1 1.000 - - X3328
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.940

Return to query results.
Submit another query.