DRSC/TRiP Functional Genomics Resources

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Protein Alignment Fer2 and ptf1a

DIOPT Version :9

Sequence 1:NP_001287359.1 Gene:Fer2 / 41961 FlyBaseID:FBgn0038402 Length:283 Species:Drosophila melanogaster
Sequence 2:XP_002933181.5 Gene:ptf1a / 100494161 XenbaseID:XB-GENE-484425 Length:270 Species:Xenopus tropicalis


Alignment Length:156 Identity:64/156 - (41%)
Similarity:81/156 - (51%) Gaps:38/156 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    71 IQQHYMQ----HSGENLLDSSTNPMGVHNSGGGAPLMCNSPSASSSGGGCGNAGSATPGGAGGPN 131
            ||.:|..    |:.:...|:. |.....:|.||.|..|..       |||    ..:||..|   
 Frog    51 IQDYYRDSRGLHTDDEYCDAG-NFSFSSSSSGGFPYECGE-------GGC----ELSPGMKG--- 100

  Fly   132 PGYGSV----GAATASSYKMQ--RQAANVRERKRIQRSAPTGYTKCSINSAFDELRVHVPTFPYE 190
               ||:    .....|..:||  |||||||||:|:|          |||.||:.||.|:||.|||
 Frog   101 ---GSLVMKRRRRLRSDAEMQQLRQAANVRERRRMQ----------SINDAFEGLRSHIPTLPYE 152

  Fly   191 KRLSKIDTLRLAIAYISLLREVLQTD 216
            |||||:|||||||.||:.|.|::|:|
 Frog   153 KRLSKVDTLRLAIGYINFLSELVQSD 178

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Fer2NP_001287359.1 HLH 148..210 CDD:278439 39/63 (62%)
ptf1aXP_002933181.5 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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