DRSC/TRiP Functional Genomics Resources

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Protein Alignment Fer2 and onecut3

DIOPT Version :9

Sequence 1:NP_001287359.1 Gene:Fer2 / 41961 FlyBaseID:FBgn0038402 Length:283 Species:Drosophila melanogaster
Sequence 2:XP_002938867.1 Gene:onecut3 / 100491290 XenbaseID:XB-GENE-484505 Length:439 Species:Xenopus tropicalis


Alignment Length:148 Identity:34/148 - (22%)
Similarity:43/148 - (29%) Gaps:46/148 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 PISHLP--------FHNFDDDLINDLPSCIYAGQHQGGGATGGGGGS------GGGGGSSGLRLS 64
            |:.|||        ||:         |...:...|......|...||      ..|..|.|    
 Frog    91 PLQHLPPISTVSDKFHH---------PHHHHHHHHHHQRLAGNVSGSFTLMRDERGLASMG---- 142

  Fly    65 SNNLRHIQQHY---MQHSGENLLDSSTNPMGVHNS-------GGGAPL----MCNSPSASSSGGG 115
                 ::..||   |...|:.|...|.....:|||       |.|..|    |.:..|..|....
 Frog   143 -----NLYGHYPKDMTTMGQPLSPLSNGLGTLHNSQQSLGPYGPGGHLSNEKMLSPNSFDSHAAM 202

  Fly   116 CGNAGSATPGGAGGPNPG 133
            ...:......|.|||..|
 Frog   203 LSRSEDHLTRGLGGPGAG 220

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Fer2NP_001287359.1 HLH 148..210 CDD:278439
onecut3XP_002938867.1 CUT 262..332 CDD:367059
HOX 359..414 CDD:197696
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4029
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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