DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5916 and sgsm2

DIOPT Version :9

Sequence 1:NP_001287357.1 Gene:CG5916 / 41960 FlyBaseID:FBgn0038401 Length:330 Species:Drosophila melanogaster
Sequence 2:XP_003200084.2 Gene:sgsm2 / 799094 ZFINID:ZDB-GENE-131119-52 Length:1056 Species:Danio rerio


Alignment Length:273 Identity:59/273 - (21%)
Similarity:118/273 - (43%) Gaps:62/273 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    82 KISGAAAAQRRSPDLFRNLLRTEPFDKEISDSISIDLPRTFPD------NIHF--DMKKQRLYNI 138
            |::..::::..:|..       ..:..|:.|:::::|.|...|      |.::  ....::|.||
Zfish   815 KLTTTSSSEGTAPSF-------SSYTIELLDTVALNLHRIDKDVQRCDRNYYYFTSSNLEKLRNI 872

  Fly   139 LIAYAHHNRDVGYCQGLNYIAGLLLIVTDDEEKSF----WLLKHIVENI----VPQYHSHNMANL 195
            :.:|...:.::||.||:..:...|:::.|||..::    .|::.:.:|.    ....|..||.:|
Zfish   873 MCSYVWEHLEIGYVQGMCDLLAPLMVILDDECLAYSCFTQLMRRMSQNFPTGGAMDTHFANMRSL 937

  Fly   196 LR--DLAVFRELVIRRIPAVNRHVDNLGLPYPVIASKWFICIFAEVLPVETVLRIWDCVFAEGYK 258
            ::  |..:| ||:         | .|....:.....:||:..|...|..|.|..:|:.::     
Zfish   938 IQILDSELF-ELM---------H-QNGDYTHFYFCYRWFLLDFKRELLYEDVFAVWEVIW----- 986

  Fly   259 IVFRAALTMFVTHKNAILGCDDIA-ALANLFRDTMIQDNI-VTDCHGFVEAMFS-------LRLK 314
                  :...::.|:.:|   .|| ||..::||.::.:|: .||...|...|..       ||:.
Zfish   987 ------VAPRISSKHFVL---FIALALVEVYRDIILDNNMDFTDIIKFFNEMAERHDVQHILRMA 1042

  Fly   315 RSELESLRKVAVL 327
            |   |.:.||..|
Zfish  1043 R---ELVHKVQTL 1052

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5916NP_001287357.1 TBC 67..276 CDD:214540 40/211 (19%)
sgsm2XP_003200084.2 RUN 43..189 CDD:308412
PH_RUTBC 262..432 CDD:275431
TBC <844..1013 CDD:214540 43/193 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5210
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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