DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5916 and rabgap1l

DIOPT Version :9

Sequence 1:NP_001287357.1 Gene:CG5916 / 41960 FlyBaseID:FBgn0038401 Length:330 Species:Drosophila melanogaster
Sequence 2:XP_021325262.1 Gene:rabgap1l / 555272 ZFINID:ZDB-GENE-050208-389 Length:1069 Species:Danio rerio


Alignment Length:251 Identity:75/251 - (29%)
Similarity:121/251 - (48%) Gaps:14/251 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    46 WEAILQ--QNTDLTQVDAKLKRYIRKGIPGPYRPDVWMKISGAAAAQRRSPDLFRNLLRTEPFDK 108
            |..||.  |...||:... |...::.|||...|.:||..:||....|... :.:|.|:..|...:
Zfish   537 WGGILNRWQGNLLTRPKG-LSALVKPGIPEALRAEVWQLLSGCHNDQALL-EQYRILITKESAQE 599

  Fly   109 EISDSISIDLPRTFPDNIHFDMK----KQRLYNILIAYAHHNRDVGYCQGLNYIAGLLLIVTDDE 169
            .:   |:.|:.||||.:.:|...    :..||.|..||:.::.::|||||.:::|.:||:.. .|
Zfish   600 AV---ITRDIHRTFPAHDYFKDSGGDGQDSLYKICKAYSVYDEEIGYCQGQSFLAAVLLLHM-PE 660

  Fly   170 EKSFWLLKHIVENI-VPQYHSHNMANLLRDLAVFRELVIRRIPAVNRHVDNLGLPYPVIASKWFI 233
            |::|.:|..|:.|. :.:.:.:|..:|.........|:...:|.:..|...|.|...:.||:||:
Zfish   661 EQAFCVLVKIMFNYGLRELYRNNFEDLHCKFYQLERLLQELLPDLWSHFQELNLEAHMYASQWFL 725

  Fly   234 CIFAEVLPVETVLRIWDCVFAEGYKIVFRAALTMFVTHKNAILGCDDIAALANLFR 289
            .:|....|:..|..|.|.:..||..|:|..||.:..|.|..:|..|...|| ..||
Zfish   726 TLFTAKFPLCMVFHITDLLLCEGLNIIFNVALALLKTSKEDLLQADFEGAL-KFFR 780

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5916NP_001287357.1 TBC 67..276 CDD:214540 62/213 (29%)
rabgap1lXP_021325262.1 PTB_Rab6GAP 157..285 CDD:269922
DUF3694 319..450 CDD:315198
RabGAP-TBC 565..768 CDD:306939 59/207 (29%)
SMC_N 784..>1042 CDD:330553
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5210
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

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