DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5916 and Sgsm1

DIOPT Version :10

Sequence 1:NP_650524.1 Gene:CG5916 / 41960 FlyBaseID:FBgn0038401 Length:330 Species:Drosophila melanogaster
Sequence 2:XP_006535185.1 Gene:Sgsm1 / 52850 MGIID:107320 Length:1148 Species:Mus musculus


Alignment Length:253 Identity:59/253 - (23%)
Similarity:108/253 - (42%) Gaps:63/253 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   106 FDKEISDSISIDLPRTFPDNIHFDMKK-------------QRLYNILIAYAHHNRDVGYCQGLNY 157
            :..|:.|..:::|.|     |..|:::             ::|.||:.:|...:.::||.||:..
Mouse   924 YSPELLDLYTVNLHR-----IEKDVQRCDRSYWYFTAANLEKLRNIMCSYIWQHIEIGYVQGMCD 983

  Fly   158 IAGLLLIVTDDEEKSF----WLLKHIVENI----VPQYHSHNMANLLR--DLAVFRELVIRRIPA 212
            :...||::.|||..:|    .|:|.:.:|.    ....|..||.:|::  |..:| ||:      
Mouse   984 LLAPLLVILDDEALAFSCFTELMKRMNQNFPHGGAMDTHFANMRSLIQILDSELF-ELM------ 1041

  Fly   213 VNRHVDNLGLPYPVIASKWFICIFAEVLPVETVLRIWDCVFAEGYKIVFRAALTMFVTHKNAILG 277
               | .|....:.....:||:..|...|..:.|..:|:.::|.  |.|..|...:|:.       
Mouse  1042 ---H-QNGDYTHFYFCYRWFLLDFKRELVYDDVFSVWETIWAA--KHVSSAHYVLFIA------- 1093

  Fly   278 CDDIAALANLFRDTMIQDNI-VTDCHGFVEAMFS-------LRLKRSELESLRKVAVL 327
                .||..::||.::::|: .||...|...|..       |:|.|   :.:.||.:|
Mouse  1094 ----LALVEVYRDIILENNMDFTDIIKFFNEMAERHNAKQILQLAR---DLVHKVQIL 1144

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5916NP_650524.1 TBC 67..276 CDD:214540 44/192 (23%)
Sgsm1XP_006535185.1 RUN_SGSM1 20..196 CDD:439065
PH_RUTBC 254..425 CDD:275431
TBC <936..1105 CDD:214540 46/197 (23%)
Blue background indicates that the domain is not in the aligned region.

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