DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5916 and Sgsm1

DIOPT Version :9

Sequence 1:NP_001287357.1 Gene:CG5916 / 41960 FlyBaseID:FBgn0038401 Length:330 Species:Drosophila melanogaster
Sequence 2:XP_006535185.1 Gene:Sgsm1 / 52850 MGIID:107320 Length:1148 Species:Mus musculus


Alignment Length:253 Identity:59/253 - (23%)
Similarity:108/253 - (42%) Gaps:63/253 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   106 FDKEISDSISIDLPRTFPDNIHFDMKK-------------QRLYNILIAYAHHNRDVGYCQGLNY 157
            :..|:.|..:::|.|     |..|:::             ::|.||:.:|...:.::||.||:..
Mouse   924 YSPELLDLYTVNLHR-----IEKDVQRCDRSYWYFTAANLEKLRNIMCSYIWQHIEIGYVQGMCD 983

  Fly   158 IAGLLLIVTDDEEKSF----WLLKHIVENI----VPQYHSHNMANLLR--DLAVFRELVIRRIPA 212
            :...||::.|||..:|    .|:|.:.:|.    ....|..||.:|::  |..:| ||:      
Mouse   984 LLAPLLVILDDEALAFSCFTELMKRMNQNFPHGGAMDTHFANMRSLIQILDSELF-ELM------ 1041

  Fly   213 VNRHVDNLGLPYPVIASKWFICIFAEVLPVETVLRIWDCVFAEGYKIVFRAALTMFVTHKNAILG 277
               | .|....:.....:||:..|...|..:.|..:|:.::|.  |.|..|...:|:.       
Mouse  1042 ---H-QNGDYTHFYFCYRWFLLDFKRELVYDDVFSVWETIWAA--KHVSSAHYVLFIA------- 1093

  Fly   278 CDDIAALANLFRDTMIQDNI-VTDCHGFVEAMFS-------LRLKRSELESLRKVAVL 327
                .||..::||.::::|: .||...|...|..       |:|.|   :.:.||.:|
Mouse  1094 ----LALVEVYRDIILENNMDFTDIIKFFNEMAERHNAKQILQLAR---DLVHKVQIL 1144

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5916NP_001287357.1 TBC 67..276 CDD:214540 44/192 (23%)
Sgsm1XP_006535185.1 RUN 44..186 CDD:367169
PH_RUTBC 254..425 CDD:275431
TBC <936..1105 CDD:214540 46/197 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5210
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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