DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5916 and Rabgap1l

DIOPT Version :9

Sequence 1:NP_001287357.1 Gene:CG5916 / 41960 FlyBaseID:FBgn0038401 Length:330 Species:Drosophila melanogaster
Sequence 2:XP_006496938.1 Gene:Rabgap1l / 29809 MGIID:1352507 Length:1051 Species:Mus musculus


Alignment Length:228 Identity:66/228 - (28%)
Similarity:114/228 - (50%) Gaps:11/228 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    67 IRKGIPGPYRPDVWMKISGAAAAQRRSPDLFRNLLRTEPFDKEISDSISIDLPRTFPDNIHFDMK 131
            ::.|:|...|.:||..::|....|... |.:|.|:..:...:.:   |:.|:.||||.:.:|...
Mouse   535 VKSGVPEALRAEVWQLLAGCHDNQEML-DKYRILITKDSAQESV---ITRDIHRTFPAHDYFKDT 595

  Fly   132 ----KQRLYNILIAYAHHNRDVGYCQGLNYIAGLLLIVTDDEEKSFWLLKHIVENI-VPQYHSHN 191
                ::.||.|..||:..:.|:|||||.:::|.:||:.. .||::|.:|..|:... :...:.:|
Mouse   596 GGDGQESLYKICKAYSVFDEDIGYCQGQSFLAAVLLLHM-PEEQAFCVLVTIMYGYKLRDLYRNN 659

  Fly   192 MANLLRDLAVFRELVIRRIPAVNRHVDNLGLPYPVIASKWFICIFAEVLPVETVLRIWDCVFAEG 256
            ..:|........:|:..::|.:..|..:|.|...:.||:||:.:|....|:..|..|.|.:..||
Mouse   660 FEDLHCKFYQLEKLMQEQLPDLYSHFCDLNLEAHMYASQWFLTLFTAKFPLCMVFHIIDLLLCEG 724

  Fly   257 YKIVFRAALTMFVTHKNAILGCDDIAALANLFR 289
            ..|:|..||.:..|.|..:|..|...|| ..||
Mouse   725 LNIIFHVALALLKTSKEDLLQADFEGAL-KFFR 756

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5916NP_001287357.1 TBC 67..276 CDD:214540 60/213 (28%)
Rabgap1lXP_006496938.1 PTB_Rab6GAP 129..257 CDD:269922
DUF3694 290..421 CDD:372133
RabGAP-TBC 541..744 CDD:366170 58/207 (28%)
Smc <814..>1019 CDD:224117
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5210
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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