DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5903 and apoob

DIOPT Version :9

Sequence 1:NP_001287356.1 Gene:CG5903 / 41959 FlyBaseID:FBgn0038400 Length:226 Species:Drosophila melanogaster
Sequence 2:NP_001005777.1 Gene:apoob / 449837 ZFINID:ZDB-GENE-041001-40 Length:219 Species:Danio rerio


Alignment Length:210 Identity:55/210 - (26%)
Similarity:93/210 - (44%) Gaps:46/210 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 TMGIMAAVAVKAAPEPQKPASSAADCSLVCRPSELPIYGSLRKTEPK-----PERHPPQDSV--L 64
            |:|:|:....        .||:|.:.|.:....||.:|.:   .||:     |:..|.:..|  |
Zfish    19 TLGLMSTTVF--------AASNAKENSAILMTDELSLYDT---PEPRLRYEEPDVGPVEQGVASL 72

  Fly    65 HKNLEAGVRYVRE-------EVQSGYKAVADQAGIVGHYVETAKAHTQSTIDMLNEPQNSLHRS- 121
            .|.:|....:.:|       ::||.||.|  :.|     |:|.:...|.....|.:|.:..:.| 
Zfish    73 RKTVEPYCSWCQERTQFAVDKIQSYYKTV--EPG-----VDTTQNIVQDIFTFLKDPPSEFYPSV 130

  Fly   122 GAIVVGGLAGFIFAARGGFIKKVLY-SGIGAGAVASMCYPRQAEENCRVV---LY----EGRKIF 178
            |.|...|:.| :|.|:|..:|:::: :|:.| ..||:.||:.|....|..   :|    |||   
Zfish   131 GVIGFSGILG-LFFAKGSTVKRLIFPTGLMA-LCASVFYPQHAASAARTTKDYMYSWGSEGR--- 190

  Fly   179 AVAYNFIKGVKPGED 193
            ||....::|....:|
Zfish   191 AVLEELLRGKSSSKD 205

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5903NP_001287356.1 ApoO 42..180 CDD:286810 42/160 (26%)
apoobNP_001005777.1 ApoO 46..193 CDD:286810 43/161 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170576087
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4798
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1605767at2759
OrthoFinder 1 1.000 - - FOG0002885
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR14564
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
65.900

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