DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5903 and apoo

DIOPT Version :9

Sequence 1:NP_001287356.1 Gene:CG5903 / 41959 FlyBaseID:FBgn0038400 Length:226 Species:Drosophila melanogaster
Sequence 2:XP_012811770.1 Gene:apoo / 100125130 XenbaseID:XB-GENE-1002771 Length:229 Species:Xenopus tropicalis


Alignment Length:186 Identity:53/186 - (28%)
Similarity:85/186 - (45%) Gaps:47/186 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 ATMGIMAAVAVKAAPE----PQKPASSAADCSLVCRPSELPIYGSLRKTEPKPERHPPQDSVLHK 66
            |::|.: ::.:.||.|    |:|          :.:..||.:|.:     |..|....:|.  ..
 Frog    16 ASLGFV-SLHIHAATEDSTSPRK----------IIKVEELSLYST-----PVQEAKYVEDK--QT 62

  Fly    67 NLEAGVRYVREEVQSGYKAVADQAGIVGHYV------ETAKAHTQSTIDMLNE-PQNSLHRSGAI 124
            .||.||.:||:.| :.|.:....|     |:      |||..|::.|.:.|.: |.....|.|.|
 Frog    63 QLEEGVSWVRQAV-APYTSWCQDA-----YIKAKPKFETAVEHSKGTYEFLKDAPPGFYPRLGLI 121

  Fly   125 VVGGLAGFIFAARGGFIKKVLY----SGIGAGAVASMCYPRQA---EENCRVVLYE 173
            ...|:.| :|.|||..:|||:|    .|:|    ||:.||:||   .::...|:|:
 Frog   122 GFAGIVG-LFLARGSRVKKVIYPLGFMGLG----ASLYYPQQAVTIAKDTSAVMYD 172

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5903NP_001287356.1 ApoO 42..180 CDD:286810 44/146 (30%)
apooXP_012811770.1 ApoO 45..181 CDD:286810 44/146 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 47 1.000 Domainoid score I11838
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1605767at2759
OrthoFinder 1 1.000 - - FOG0002885
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR14564
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
44.110

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