DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sb and Tmprss13

DIOPT Version :9

Sequence 1:NP_001287355.1 Gene:Sb / 41958 FlyBaseID:FBgn0003319 Length:787 Species:Drosophila melanogaster
Sequence 2:NP_001121000.1 Gene:Tmprss13 / 300682 RGDID:1310872 Length:539 Species:Rattus norvegicus


Alignment Length:557 Identity:154/557 - (27%)
Similarity:227/557 - (40%) Gaps:145/557 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   330 PARPSKPSKPTK-----KPIVYDRTPPPPPSVPPSTSTSTTSTSLIWPAQTHPPQ--PHRPTRPQ 387
            |||||..:.|.:     .|.   |||||..|                ||:..|||  |.|.:..:
  Rat    11 PARPSPQASPARASPQASPA---RTPPPQAS----------------PARASPPQASPARASPAR 56

  Fly   388 LSPGTSLAASSSSHWPS-STTSTTSSTTSTTTTTTTTR---------RTTTPTTTTRRTTTNKPT 442
            .||   :.||.:...|| |::..:||..|.:||::.||         .|....:..|.....:.|
  Rat    57 ASP---VRASPARAPPSRSSSGRSSSARSASTTSSPTRVYLVRAIPVGTVIRASPARSAPATRAT 118

  Fly   443 RPYQRPTTATSSSSTSTTSSKTPTT----------------------------TRPISSSS---- 475
            |  :.|..:....|...|..:.|..                            ..|:.|..    
  Rat   119 R--ESPGLSFPKFSWQETQRQLPLIGCVLLLISLVISLILLFYFWRGHTGIKYKEPLESCPKHAV 181

  Fly   476 ------------------------------SSSSG----IVTSSQRPTQPTHRTPVLA-TSGIET 505
                                          |.|||    :.:||...|........|. .|...|
  Rat   182 RCDGVVDCKMKSDELGCVRFDWDKSLLKVYSGSSGEWLPVCSSSWNDTDSERTCQQLGFDSAYRT 246

  Fly   506 NEISDSSIPDAGALGHVKTI---SAARSECGVPT------------LARPETRIVGGKSAAFGRW 555
            .|::...:..:..|....:.   |..||||  |:            |.....|||||...:..:|
  Rat   247 TEVAHRDVTSSFLLSEYNSTIQESLTRSEC--PSRRYVSLQCAHCGLRAMTGRIVGGALTSESKW 309

  Fly   556 PWQVSVRRTSFFGFSSTHRCGGALINENWIATAGHCVDDLLISQIRIRVG--EYDFSHVQEQLPY 618
            |||||:.      |.:||.|||.||:..|:.||.||   ..:::.:|..|  .|..:....|||.
  Rat   310 PWQVSLH------FGTTHICGGTLIDAQWVLTAAHC---FFVTREKILEGWKVYAGTSNLHQLPE 365

  Fly   619 IERGVAKKVVHPKYSFLTYEYDLALVKLEQPLEFAPHVSPICLPETDSLLIGMNAT--VTGWGRL 681
             ...:::.:::..|:....:||:|||:|.:||..:.|:.|.||| ......|:|.|  :||:|:.
  Rat   366 -AASISQIIINGNYTDEQDDYDIALVRLSKPLTLSAHIHPACLP-LHGQTFGLNETCWITGFGKT 428

  Fly   682 SEGGTLPS-VLQEVSVPIVSNDNCKSMFMRAGRQEFIPDIFLCAGYETGGQDSCQGDSGGPLQAK 745
            .|.....| .|:||.|.::....|....:   ...::....:|||...||:|||||||||||..:
  Rat   429 KETDEKTSPFLREVQVNLIDFKKCNDYLV---YDSYLTPRMMCAGDLRGGRDSCQGDSGGPLVCE 490

  Fly   746 SQDGRFFLAGIISWGIGCAEANLPGVCTRISKFTPWI 782
             |:.|::|||:.|||.||.:.|.|||.|::::..|||
  Rat   491 -QNNRWYLAGVTSWGTGCGQKNKPGVYTKVTEVLPWI 526

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SbNP_001287355.1 Tryp_SPc 543..782 CDD:214473 89/243 (37%)
Tryp_SPc 544..785 CDD:238113 90/244 (37%)
Tmprss13NP_001121000.1 WWbp <1..69 CDD:304964 24/79 (30%)
SRCR_2 203..292 CDD:292133 18/90 (20%)
SRCR 216..288 CDD:278931 15/73 (21%)
Tryp_SPc 297..526 CDD:214473 89/243 (37%)
Tryp_SPc 298..526 CDD:238113 88/242 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166337558
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.840

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