DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sb and Tmprss2

DIOPT Version :9

Sequence 1:NP_001287355.1 Gene:Sb / 41958 FlyBaseID:FBgn0003319 Length:787 Species:Drosophila melanogaster
Sequence 2:XP_008766769.1 Gene:Tmprss2 / 156435 RGDID:620766 Length:580 Species:Rattus norvegicus


Alignment Length:539 Identity:150/539 - (27%)
Similarity:218/539 - (40%) Gaps:117/539 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   299 QNHWQMTTEPSFITKPRPTGWTKPGIVNLPMPARPSKPSKPTKKPIVYDRTPPPPPSVPPSTS-- 361
            :||..   :...:..|||.  ..|...|| .||:......|...|.|..:...|...:.|.:|  
  Rat    16 ENHGY---QSEHVYSPRPP--VSPSGYNL-YPAQSCPSPVPQYAPRVTTQASTPAIHIQPRSSGT 74

  Fly   362 --TSTTSTSLIWPAQTHPPQPHRPTRPQLSPGTSLAASSSS------HWPSSTTSTTSSTTSTTT 418
              ||.:..|::               ..|:.||.||.::.:      .|.|..:|:.....|:.|
  Rat    75 LCTSKSKKSML---------------VALALGTVLAGAAVAAGLLWKFWDSKCSSSEMECGSSGT 124

  Fly   419 TTTTTRRTTTPTTTTRRTTTNKPTRPYQRPTTATSSSSTSTTSSKTPTTTRPISSSSSSSSGIVT 483
            ..:::......:........|:..|.|          .||.|..                   |.
  Rat   125 CISSSLWCDGVSQCPNGEDENRCVRLY----------GTSFTLQ-------------------VY 160

  Fly   484 SSQRPT---------QPTHRTPVLATSGIETNEISDSSIPD-AGALGHVK--------------- 523
            ||||..         ..::........|.:.:..|...||| :||...:|               
  Rat   161 SSQRKAWYPVCQDDWNESYGRAACKDMGYKNSFYSSQGIPDQSGATSFMKLNVSAGNVDLYKKLY 225

  Fly   524 ---------TISAARSECGVPTLARPETRIVGGKSAAFGRWPWQVSVRRTSFFGFSSTHRCGGAL 579
                     .:|....||||.::.| ::|||||.:|:.|.||||||:.      ....|.|||::
  Rat   226 HSDSCSSRMVVSLRCIECGVRSVRR-QSRIVGGSTASPGDWPWQVSLH------VQGIHVCGGSI 283

  Fly   580 INENWIATAGHCVDDLLISQIRIRVGEY--DFSHVQEQ--LPYIERGVAKKVV-HPKYSFLTYEY 639
            |...||.||.|||::.|.|.      .|  .|:.:.:|  :.|..|...:||: ||.|...|...
  Rat   284 ITPEWIVTAAHCVEEPLSSP------RYWTAFAGILKQSLMFYGSRHQVEKVISHPNYDSKTKNN 342

  Fly   640 DLALVKLEQPLEFAPHVSPICLPETDSLL-IGMNATVTGWGRLSEGGTLPSVLQEVSVPIVSNDN 703
            |:||:||:.||.|...|.|:|||....:| :.....::|||...|.|....||....||::....
  Rat   343 DIALMKLQTPLAFNDVVKPVCLPNPGMMLDLAQECWISGWGATYEKGKTSDVLNAAMVPLIEPSK 407

  Fly   704 CKSMFMRAGRQEFIPDIFLCAGYETGGQDSCQGDSGGPLQAKSQDGRFFLAGIISWGIGCAEANL 768
            |.|.::   ....|....:|||:..|..|||||||||||.....: .::|.|..|||.|||:|..
  Rat   408 CNSKYI---YNNLITPAMICAGFLQGSVDSCQGDSGGPLVTLKNE-IWWLIGDTSWGSGCAKAYR 468

  Fly   769 PGVCTRISKFTPWILEHVR 787
            |||...::.||.||.:.:|
  Rat   469 PGVYGNVTVFTDWIYQQMR 487

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SbNP_001287355.1 Tryp_SPc 543..782 CDD:214473 93/244 (38%)
Tryp_SPc 544..785 CDD:238113 94/246 (38%)
Tmprss2XP_008766769.1 LDLa 112..147 CDD:238060 4/34 (12%)
SRCR_2 152..247 CDD:292133 21/113 (19%)
Tryp_SPc 253..482 CDD:214473 93/244 (38%)
Tryp_SPc 254..485 CDD:238113 94/246 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166337581
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm44824
orthoMCL 1 0.900 - - OOG6_100031
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.740

Return to query results.
Submit another query.