DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Mhcl and GOPC

DIOPT Version :9

Sequence 1:NP_732109.2 Gene:Mhcl / 41955 FlyBaseID:FBgn0026059 Length:2194 Species:Drosophila melanogaster
Sequence 2:NP_065132.1 Gene:GOPC / 57120 HGNCID:17643 Length:462 Species:Homo sapiens


Alignment Length:494 Identity:102/494 - (20%)
Similarity:176/494 - (35%) Gaps:131/494 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly  1500 GVGGGVYKLKYERVARELEFTKRRLHTQ---HEHDLEQL-VALKKHLEM-KLSDAYEEVVEQRQV 1559
            |..|||...::..|. |.||.|..:...   .|.|.:|. :..:...:| .||..:.::..:.|.
Human    23 GAPGGVSMFRWLEVL-EKEFDKAFVDVDLLLGEIDPDQADITYEGRQKMTSLSSCFAQLCHKAQS 86

  Fly  1560 VGQWKRKAQKMTNEMNDLRMLLEEQNARNNLLEKKQRKFDAECQSLQ-DAVRQERQAKERYGREK 1623
            |.|...|.:.   ::.||:..|.|..|...:|||     :...|.|| .:::.:..||.....:.
Human    87 VSQINHKLEA---QLVDLKSELTETQAEKVVLEK-----EVHDQLLQLHSIQLQLHAKTGQSADS 143

  Fly  1624 DVLQAEKFTLEQTLADTRLDLEF-KEEKLASLQRELEEMTFGGGTEEEFAQLRRSKNETERR--- 1684
            ..::|:  ....::.:...:||. |:||:...|.|.|            .:|.|.:||..||   
Human   144 GTIKAK--LSGPSVEELERELEANKKEKMKEAQLEAE------------VKLLRKENEALRRHIA 194

  Fly  1685 ------------AKEQEEELDEMAGQIQLLEQAKLRLEMTLETMRKEARRESQQRDEELEEVRGN 1737
                        ||..::||.....|||||.:                            :::|.
Human   195 VLQAEVYGARLAAKYLDKELAGRVQQIQLLGR----------------------------DMKGP 231

  Fly  1738 GYKKIKALECQLETE---HEERTLL--LREKHELERRLSSMEDRDRVDRDAEEALNQKLRRDLRK 1797
            .:.|   |..|||.|   |..:|::  .|.:::|:|.:.:....|                    
Human   232 AHDK---LWNQLEAEIHLHRHKTVIRACRGRNDLKRPMQAPPGHD-------------------- 273

  Fly  1798 YKALLKDAQTQLERLKADTPGKTLIRQLRNQLEDAESARSLAMKARQTAEAELTEVQAMFDESHR 1862
                    |..|::.:...|    ||::....||.|.........::..      |..:..|.|.
Human   274 --------QDSLKKSQGVGP----IRKVLLLKEDHEGLGISITGGKEHG------VPILISEIHP 320

  Fly  1863 ARNDAEERANAAHRDRAELQAQIEENEEELGELMKKYSATVKQLNTEQINVSEAEFKLNEMEAER 1927
            .:  ..:|....|...|.|..    |...|.:...|.:.|:......:|.. |..:...|::::.
Human   321 GQ--PADRCGGLHVGDAILAV----NGVNLRDTKHKEAVTILSQQRGEIEF-EVVYVAPEVDSDD 378

  Fly  1928 NNLKEQVAELQHR----LDNVENLGDPSMAMMSKRLELR 1962
            .|: |...|..||    ||.:|..|:|..:......|::
Human   379 ENV-EYEDESGHRYRLYLDELEGGGNPGASCKDTSGEIK 416

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MhclNP_732109.2 PDZ_signaling 339..426 CDD:238492
MYSc 556..1317 CDD:214580
MYSc_Myo18 575..1305 CDD:276837
GBP_C <1540..1750 CDD:303769 48/227 (21%)
COG1340 1565..1833 CDD:224259 58/289 (20%)
coiled coil 1723..1734 CDD:293879 0/10 (0%)
GOPCNP_065132.1 bZIP_2 <166..199 CDD:285017 12/44 (27%)
PDZ_signaling 286..368 CDD:238492 18/94 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 426..449
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.900

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