DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mhcl and jar

DIOPT Version :9

Sequence 1:NP_732109.2 Gene:Mhcl / 41955 FlyBaseID:FBgn0026059 Length:2194 Species:Drosophila melanogaster
Sequence 2:NP_001014650.2 Gene:jar / 42889 FlyBaseID:FBgn0011225 Length:1268 Species:Drosophila melanogaster


Alignment Length:1345 Identity:288/1345 - (21%)
Similarity:512/1345 - (38%) Gaps:314/1345 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   564 EDICELKYLNEASVLHCLRQRYASNLIHTKAGPTLLVVNPMAPL-SLYSEKVVSMFRGCKTEDMP 627
            :|.|||..||||:.|..|:.||..:.|:|.....|:.|||...: .||:...:..:.|....::|
  Fly    60 DDNCELMLLNEATFLDNLKTRYYKDKIYTYVANILIAVNPYREIKELYAPDTIKKYNGRSLGELP 124

  Fly   628 PHVYSLAQTAYRSLVETRRDQSLIFMGRSGSGKSTSFKHALNYLAL---AAGAYNNFINAEKVNA 689
            |||:::|..|.|.:...:..||:|..|.||:||:.|.|:.|.||..   :||....     |:..
  Fly   125 PHVFAIADKAIRDMRVYKLSQSIIVSGESGAGKTESTKYLLKYLCYSHDSAGPIET-----KILD 184

  Fly   690 LCTILEAFGNTKTCLNSNATRMTQLLSLDFDQTGQIASASLQVLLPERQRAGRRLGHEHSFHIMT 754
            ...:||||||.||..|:|::|..:.:.:.:|...|:....:...|.|:.|...:...|.::|:..
  Fly   185 ANPVLEAFGNAKTTRNNNSSRFGKFIEVHYDAKCQVVGGYISHYLLEKSRICTQSAEERNYHVFY 249

  Fly   755 RLLAGAAGLLQKELHL----------------ENITSEDSHPFISLSQKLEDRHRAANDFMRTVQ 803
            .|||||...|:.:|.|                .|..:|...|....|:..:.:....:..:...|
  Fly   250 MLLAGAPQQLRDKLSLGKPDDYRYLSGCTQYFANAKTEQLIPGSQKSKNHQQKGPLKDPIIDDYQ 314

  Fly   804 AFETLNIDAKAVR---------GIWSILAAIYHLGIAGVTKLGTGSTARTQF--ANPTAARKASG 857
            .|.  |:|....|         ||:|::||:.|||.....::........|.  |:..:....||
  Fly   315 HFH--NLDKALGRLGLSDTEKLGIYSLVAAVLHLGNIAFEEIPDDVRGGCQVSEASEQSLTITSG 377

  Fly   858 LLGVNLEDLSSAAFGLTQPNAPNGG------LSPSKSPTSDTGHEWAWECLEALVIGLYSEALAA 916
            ||||:..:|.:|...... .:..||      :.|.|...:....       :||...:||.....
  Fly   378 LLGVDQTELRTALVSRVM-QSKGGGFKGTVIMVPLKIYEASNAR-------DALAKAIYSRLFDR 434

  Fly   917 VVALINRQICTSSHTIASIMLIDTPGFQNPASCGQQVGATLADLRH---NYLQERLQMLFHHTTL 978
            :|.|||:.|...:... .|.::|..||:.         .|:.....   ||..|:||..|:...|
  Fly   435 IVGLINQSIPFQASNF-YIGVLDIAGFEY---------FTVNSFEQFCINYCNEKLQKFFNDNIL 489

  Fly   979 VAPRDRYAQELVEIEMDLASECHPGPLISLIDKAPQNHVVRSSQRDLREHDRRGMLWLLDEEAIY 1043
            ...::.|.:|.:.:           |.|:..|.  |:.:      :|.|....|:..|||||:..
  Fly   490 KNEQELYKREGLNV-----------PEITFTDN--QDII------ELIEAKSNGIFTLLDEESKL 535

  Fly  1044 PNSNDDTFLERLFSHYGDREH-------------------HSLLRKCAGPRQFVLHHLQGTNPVL 1089
            |..:        :||:....|                   |..||...|   |::.|..|.  |.
  Fly   536 PKPS--------YSHFTAEVHKSWANHYRLGLPRSSRLKAHRTLRDEEG---FLVRHFAGA--VC 587

  Fly  1090 YAVDGWVRHSRE--HPGIRNAVSLLQDSSREEINRLYIGSLTRGSGAMVFCGSFAGLEGTQSLRR 1152
            |..:.::..:.:  |..:.   .|:|:.....:..|:..            ||...:.|      
  Fly   588 YNTEQFIEKNNDALHASLE---GLVQECDNPLLQTLFPS------------GSSTSVRG------ 631

  Fly  1153 VSSIRRSFTTAGVKRNSIMLQVKFTVDGIIDTLRRTGTHFVHCYLLQHNAGKHTKYTANGSPSSA 1217
                :.:|.:.|.|       .|..:..:::.|.:.||:|:.|  ::.|: |.......||    
  Fly   632 ----KLNFISVGSK-------FKTQLGELMEKLEQNGTNFIRC--IKPNS-KMIDRQFEGS---- 678

  Fly  1218 AGQVSSEEEMVNVPLLRSQLRGSQVLEAARLHRLGFPESVPLLEFVRRF-GLLAGDLAS-NKDVS 1280
                          |..:||:.|..:....|...|:|..|...:....: .:|..:|.| .....
  Fly   679 --------------LALAQLKCSGTISVLELMEHGYPSRVLFADLYSMYKSVLPPELVSLPARTF 729

  Fly  1281 VEQILAVNELDVASYRIGPSQILFRSGVLSELEAKRDVLLSD--RIIQLQAFCRGYLARKKMSQR 1343
            .|.:.....|....::.|.:::.||.|...|.:.   ::.||  .::.:.|..:.:|.|.:..:.
  Fly   730 CEAMFQSLNLSAKDFKFGITKVFFRPGKFVEFDR---IMRSDPENMLAIVAKVKKWLIRSRWVKS 791

  Fly  1344 RVQELAV-----------RCI---QRNVKAFLAVRDW-PWWRLLVRVTPL-LNVHRTEE---QLK 1389
            .:..|.|           :|:   ||..:.|||.:.. |.::.:.::..: .|..:|.|   .||
  Fly   792 ALGALCVIKLRNRIIYRNKCVLIAQRIARGFLARKQHRPRYQGIGKINKIRTNTLKTIEIASGLK 856

  Fly  1390 TANEELL--------MLRAKLEKIECD----RSEVKAENQKLEAKLSELTVDLAEERSTAHIATE 1442
            ...||::        .:...::||:.:    :.|:.:....:.|.:::|||||..:      ..|
  Fly   857 MGREEIISGVNDIYRQIDDAIKKIKMNPRITQREMDSMYTVVMANMNKLTVDLNTK------LKE 915

  Fly  1443 RLEAETAERLKLEKELGDQTNKVKNLQETTEKLEMELICAKSDLNGISEDEDAENEDGVGGGVYK 1507
            :.:||..|||:..:|..:.....|..:|..::                  |:.||:        :
  Fly   916 QQQAEEQERLRKIQEALEAERAAKEAEEQRQR------------------EEIENK--------R 954

  Fly  1508 LKYERVARELEFTKRRLHTQHEHDLEQLVALKKHLEMKLSD--AYEEVVEQ------------RQ 1558
            ||.|...|......:||. |.|.|....:||::.||.:..|  .|.:.:||            .:
  Fly   955 LKAEMETRRKAAEAQRLR-QEEEDRRAALALQEQLEKEAKDDAKYRQQLEQERRDHELALRLANE 1018

  Fly  1559 VVGQWKRKAQKMTNEMNDL--------------------RMLLEEQNARNNLLEKKQRKFDA--- 1600
            ..||.:.....:.|.:||.                    |.|.:.:|.|.......::|:|.   
  Fly  1019 SNGQVEDSPPVIRNGVNDASPMGPNKLISFSQVVSNIASRYLNKSENVRAQQQALGKQKYDLSKW 1083

  Fly  1601 ECQSLQDAVRQE------RQAKERYGREKDVLQA------EKFTLEQTLADTR--LDLEFKEEKL 1651
            :...|:||:...      ...::.:.|...|..|      ::.|:::.....|  ::..||:..|
  Fly  1084 KYSELRDAINTSCDIELLEACRQEFHRRLKVYHAWKAKNRKRTTMDENERAPRSVMEAAFKQPPL 1148

  Fly  1652 ASLQRELEEMTFGGGTEEEFAQLRRSKNETERR------------AKEQEEELDE-----MAGQI 1699
            .   :.::|:............:|.:..:..:|            |::.|...|:     :||..
  Fly  1149 V---QPIQEIVTAQHRYFRIPFMRANAPDNTKRGLWYAHFDGQWIARQMELHADKPPILLVAGTD 1210

  Fly  1700 QLLEQAKLRLEMTLETMRKEARRESQQRDEELEEVRGNGYKKIKA 1744
            . ::..:|.||.|..|.::.|.....:.:.|.|...|..||.:.|
  Fly  1211 D-MQMCELSLEETGLTRKRGAEILEHEFNREWERNGGKAYKNLGA 1254

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MhclNP_732109.2 PDZ_signaling 339..426 CDD:238492
MYSc 556..1317 CDD:214580 187/815 (23%)
MYSc_Myo18 575..1305 CDD:276837 176/792 (22%)
GBP_C <1540..1750 CDD:303769 48/273 (18%)
COG1340 1565..1833 CDD:224259 40/234 (17%)
coiled coil 1723..1734 CDD:293879 2/10 (20%)
jarNP_001014650.2 Myosin_N 7..45 CDD:280832
Myosin_head 59..754 CDD:278492 183/803 (23%)
MYSc_Myo6 71..754 CDD:276833 176/792 (22%)
RILP-like <968..1015 CDD:304877 13/47 (28%)
Myosin-VI_CBD 1160..1246 CDD:293129 15/86 (17%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45466247
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.930

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