DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Mhcl and Lnx1

DIOPT Version :9

Sequence 1:NP_732109.2 Gene:Mhcl / 41955 FlyBaseID:FBgn0026059 Length:2194 Species:Drosophila melanogaster
Sequence 2:NP_001101828.1 Gene:Lnx1 / 360926 RGDID:1308159 Length:728 Species:Rattus norvegicus


Alignment Length:552 Identity:109/552 - (19%)
Similarity:167/552 - (30%) Gaps:205/552 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   216 AGSIGSNSSQHGTSFTSVESLRSDGE------QTGGQQRAMTLP-------------ANARYGAL 261
            |.:|...:.:.|....:..|...|||      .||...|....|             .|....||
  Rat   171 AATISLMTDEPGLDNPAYTSSVEDGEPVTNPSDTGRSNRTRARPFERSTMRSRSFKKINRALSAL 235

  Fly   262 ---PQGNSQGSHLHVLTSPSPSADSLTDTTNSSFATPP------FSLSPVGESQGIDRWARVHAF 317
               ..|::..:|          ||...|  ||...|.|      |.|.|.||             
  Rat   236 RRTKSGSAVANH----------ADQGRD--NSENDTVPEVFPRLFHLIPDGE------------- 275

  Fly   318 EDVELPLPPVQLVKLPPPRQLVIR---RQKSPRQDFGFSLRKAICLDRTESLTSPIFRPVIFAEP 379
                  :..:::.::.|...|.||   ..::|               ....:...|:|..:.|..
  Rat   276 ------ITSIKINRVDPNESLSIRLVGGSETP---------------LVHIIIQHIYRDGVIARD 319

  Fly   380 GAGGGATGLLPGDRLIKVNGTPVGELPREIIIEMIRNSGEAVTVEVQPVAELVELSKRCMAPSTA 444
            |.      |||||.::||||..:..:|....:.::|          ||                 
  Rat   320 GR------LLPGDIILKVNGMDISNVPHNYAVRLLR----------QP----------------- 351

  Fly   445 TVEEIDHSITNGNCNTLRRSASKRFKRQSRHENGNGGGEEGGAKGVGHDLEADVADASQPER--- 506
                         |..||.:..:..|.:||   .|....:  :.|...|....:.:.|.||.   
  Rat   352 -------------CQVLRLTVLREQKFRSR---SNAPAPD--SYGPRDDSFHVILNKSSPEEQLG 398

  Fly   507 VWLVHR-------------GGFTAAIRLPTASSGRDEENKLSLRLLHNGEQLTVDEDDVEKQNSP 558
            :.||.|             ||  .|.|     .|:.|||...|.:  ||..|        :..||
  Rat   399 IKLVRRVDEPGVFIFNVLNGG--VADR-----HGQLEENDRVLAI--NGHDL--------RFGSP 446

  Fly   559 ALDLVEDICELKYLNEASV-LHCLRQ-RYASNLIHTKAGPTLLVVNPMAPLSLYSEKVVSMFRGC 621
                 |....|...:|..| |...|| |..|..|..:||  .:.....:|:|           |.
  Rat   447 -----ESAAHLIQASERRVHLVVSRQVRQPSPDIFQEAG--CISNGQQSPVS-----------GE 493

  Fly   622 KTEDMPPHVYSLAQTAYRSLVETRRD-QSLIFMGRSGSGKSTSFKHALNYLALAAGAYNNFINAE 685
            ::....|     |.|.:..:|..::| ...:.|...|......:...:..:::..|.        
  Rat   494 RSTSSKP-----AATCHEKVVSVQKDPNESLGMTVGGGASHREWDLPIYVISVEPGG-------- 545

  Fly   686 KVNALCTILEAFGNTKT---CLNSNATRMTQL 714
                   ::...|..||   .||.|...:|::
  Rat   546 -------VISRDGRIKTGDILLNVNGIELTEV 570

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MhclNP_732109.2 PDZ_signaling 339..426 CDD:238492 18/89 (20%)
MYSc 556..1317 CDD:214580 32/165 (19%)
MYSc_Myo18 575..1305 CDD:276837 27/146 (18%)
GBP_C <1540..1750 CDD:303769
COG1340 1565..1833 CDD:224259
coiled coil 1723..1734 CDD:293879
Lnx1NP_001101828.1 RING 45..81 CDD:214546
DegQ <260..364 CDD:223343 31/183 (17%)
PDZ_signaling 276..360 CDD:238492 25/144 (17%)
PDZ_signaling 384..464 CDD:238492 25/101 (25%)
PDZ_signaling 506..589 CDD:238492 12/80 (15%)
PDZ_signaling 637..721 CDD:238492
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.