DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Mhcl and myp2

DIOPT Version :10

Sequence 1:NP_732109.2 Gene:Mhcl / 41955 FlyBaseID:FBgn0026059 Length:2194 Species:Drosophila melanogaster
Sequence 2:NP_593816.1 Gene:myp2 / 2543576 PomBaseID:SPAC4A8.05C Length:2104 Species:Schizosaccharomyces pombe


Alignment Length:1886 Identity:419/1886 - (22%)
Similarity:750/1886 - (39%) Gaps:427/1886 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   498 VADASQPERVWLVHRGGFTAAIRLPTASSG-------RDEENKLSLRLLHNGEQLTVDEDDVEKQ 555
            |.|||..||.|          |.:|.:...       .|...|..::|..:|.:..||..|.||.
pombe    29 VKDASFDERTW----------IWIPDSKESFVKAWIVEDLGEKYRVKLERDGSERIVDGFDAEKV 83

  Fly   556 NSPALDLVEDICELKYLNEASVLHCLRQRYASNLIHTKAGPTLLVVNPMAPLSLYSEKVVSMFRG 620
            |.|..|:|:|:..|..|||.||::.|.|||..:||:|.:|..|:.|||...|.:|.:.||..::.
pombe    84 NPPKFDMVDDMAALTCLNEPSVVNNLTQRYEKDLIYTYSGLFLVAVNPYCHLPIYGDDVVRKYQS 148

  Fly   621 CKTEDMPPHVYSLAQTAYRSLVETRRDQSLIFMGRSGSGKSTSFKHALNYLALAAGAYNNFIN-- 683
            .:.::..||::..|..|||||:|.|.:||::..|.||:||:.:.|..:.||.....|..:...  
pombe   149 KQFKETKPHIFGTADAAYRSLLERRINQSILVTGESGAGKTETTKKVIQYLTSVTDASTSDSQQL 213

  Fly   684 AEKVNALCTILEAFGNTKTCLNSNATRMTQLLSLDFDQTGQIASASLQVLLPERQRAGRRLGHEH 748
            .:|:.....:||||||.:|..|:|::|..:.:.::|...|.|..|:|...|.|:.|......:|.
pombe   214 EKKILETNPVLEAFGNAQTVRNNNSSRFGKFIRIEFSNNGSIVGANLDWYLLEKSRVIHPSSNER 278

  Fly   749 SFHIMTRLLAGAAGLLQKELHLENITSEDSHPFISLSQKLEDRHRAANDFMRTVQAFETLNIDAK 813
            ::|:..:||.||.|.|.:.|.|:...  |.:.::....|..:......:|.:......||..|..
pombe   279 NYHVFYQLLRGADGSLLESLFLDRYV--DHYSYLKNGLKHINGVDDGKEFQKLCFGLRTLGFDNN 341

  Fly   814 AVRGIWSILAAIYHLGIAGVTKLGTGSTARTQFANPTAARKASGLLGVNLEDLSSAAFGLTQPNA 878
            .:..::.|:|:|.|:|...|....:|   :.:|.:.|...:...||.:.::...:||.       
pombe   342 EIHSLFLIIASILHIGNIEVASDRSG---QARFPSLTQIDQLCHLLEIPVDGFVNAAL------- 396

  Fly   879 PNGGLSPSKSPTSDTGHEW---------AWECLEALVIGLYSEALAAVVALINRQICTS-SHTIA 933
                     .|.|..|.||         ....|::|..|||....|.:|..:|:.:..| |....
pombe   397 ---------HPKSKAGREWIVTARTREQVVHTLQSLAKGLYERNFAHLVKRLNQTMYYSQSEHDG 452

  Fly   934 SIMLIDTPGFQ----NPASCGQQVGATLADLRHNYLQERLQMLFHHTTLVAPRDRYAQELVEIE- 993
            .|.::|..||:    |          :...|..|:..|:||..|:|...|..::.|.||.:|.: 
pombe   453 FIGVLDIAGFEIFTFN----------SFEQLCINFTNEKLQQFFNHYMFVLEQEEYTQERIEWDF 507

  Fly   994 MDLASECHPGPLISLIDKAPQNHVVRSSQRDLREHDRRGMLWLLDEEAIYPNSNDDTFLERLFSH 1058
            :|..::..  |.|..|:|:                :..|:...|||:.:.|.:.|.||.|:|   
pombe   508 IDYGNDLQ--PTIDAIEKS----------------EPIGIFSCLDEDCVMPMATDATFTEKL--- 551

  Fly  1059 YGDREHHSLLR--------KCAGPRQFVLHHLQGTNPVLYAVDGWVRHSREHPGIRNAVSLLQDS 1115
                  |.|.:        |......|||.|..|  .|.|....|:..::: |......:|:..|
pombe   552 ------HLLFKGKSDIYRPKKFSSEGFVLKHYAG--DVEYDTKDWLEKNKD-PLNACLAALMFKS 607

  Fly  1116 SREEINRLYIGSLTRGSGAMVFCGSFAGLEGTQSLRRVSSIRRSFTTAGVKRNSIMLQVKFTVDG 1180
            :...::.|:....:..||.       ..:|.....|.||...|.      :.:|:|.|       
pombe   608 TNSHVSSLFDDYSSNASGR-------DNIEKKGIFRTVSQRHRR------QLSSLMHQ------- 652

  Fly  1181 IIDTLRRTGTHFVHCYL-----LQHNAGKHTKYTANGSPSSAAGQVSSEEEMVNVPLLRSQLRGS 1240
                |..|..|||.|.:     ..||..|                          .|:..|||.:
pombe   653 ----LEATQPHFVRCIIPNNLKQPHNLDK--------------------------SLVLHQLRCN 687

  Fly  1241 QVLEAARLHRLGFPESVPLLEFVRRFGLLAGDLASN-KDVSVEQILAVNELDVAS--YRIGPSQI 1302
            .|||..|:.:.|||..:...||..|:|:|:..|... .:.....|..:|||.:.|  ||:|.:::
pombe   688 GVLEGIRIAQTGFPNKLFYTEFRARYGILSQSLKRGYVEAKKATITIINELKLPSTVYRLGETKV 752

  Fly  1303 LFRSGVLSELEAKRDVLLSDRII--QLQAFCRGYLARKKMSQRRVQELAVRCIQRNVKAFLAVRD 1365
            .|::.||..||.:|:.||  |:|  ...|..||:|.|:::.:...::.|...:|.|::....::.
pombe   753 FFKASVLGSLEDRRNALL--RVIFNSFSARIRGFLTRRRLYRFNHRQDAAILLQHNLRQLKLLKP 815

  Fly  1366 WPWWRLLVRVTPLLNVHRTEEQLKTANEELLMLRAKLEKIECDRSEVKAENQKLEAKLSELTVDL 1430
            .|||.|.:.:.|||...:|:|.|:..:..:..|:.:||..:    ||..|....:.::.:||.||
pombe   816 HPWWNLFLHLKPLLGTTQTDEYLRRKDALINNLQNQLESTK----EVANELTITKERVLQLTNDL 876

  Fly  1431 AEERSTAH----------------------------IATERLEAETAERLKLEKELGDQTNKVKN 1467
            .||::.||                            ||.|:.|...||:..:|::|.::..::..
pombe   877 QEEQALAHEKDILVERANSRVEVVHERLSSLENQVTIADEKYEFLYAEKQSIEEDLANKQTEISY 941

  Fly  1468 LQETTEKLEMELICAKSDLNGISED-------------------------EDAENEDGVGGGVYK 1507
            |.:.:..||.:|...|.|...||..                         |.|.||..:......
pombe   942 LSDLSSTLEKKLSSIKKDEQTISSKYKELEKDYLNIMADYQHSSQHLSNLEKAINEKNLNIRELN 1006

  Fly  1508 LKYERVARELEFTKRRLHTQ-----------------HEHDLEQLVALKKHLEMKLSDAYEEVVE 1555
            .|..|:..||...:|...|:                 :|..|..||:.....|.:|:....|:|.
pombe  1007 EKLMRLDDELLLKQRSYDTKVQELREENASLKDQCRTYESQLASLVSKYSETESELNKKEAELVI 1071

  Fly  1556 QRQVVGQWKRKAQK------MTNEMNDLR------------------MLLEEQNARNNLLEKKQR 1596
            .::.:.:::.:..|      .|:.:||::                  .:|::.....:|..|:..
pombe  1072 FQKEITEYRDQLHKAFQNPEKTHNINDVKSGPLNSDENIYSTSSTTLSILKDVQELKSLHTKEAN 1136

  Fly  1597 KFDAECQSLQDAVRQERQAKERYGREK----DVLQAEKFTLEQTLADTRLDLEFKEEKLASLQRE 1657
            :.....:.:.:.:.|....:|:..|:.    |:::|.|:.::.           :|.::.||..:
pombe  1137 QLSERIKEISEMLEQSIATEEKLRRKNSELCDIIEALKYQIQD-----------QETEIISLNAD 1190

  Fly  1658 LEEMTFGGGTEE----EFAQLRRSKNETERRAKEQEEELDEMAGQIQLLEQAKLRLEMTLETMRK 1718
            ..::....|..|    :|...:..|:..|.:..:...:|.:...::.||:|......:|..|:..
pombe  1191 NLDLKDTNGVLEKNASDFIDFQGIKSRYEHKISDLLNQLQKERCKVGLLKQKTENRSVTQHTLDG 1255

  Fly  1719 EARR---ESQQRDEELEEVRGNG-------------YKKIKALECQLETE--------------- 1752
            .:..   |.:...:.|:.:.||.             .|.:.||:..:|.|               
pombe  1256 NSPHPSFEEKHSGDPLKRIDGNNDDRKIDNKLLKTISKSLDALQLTVEEELSNLYSLSKDLSFTD 1320

  Fly  1753 ---HEERTLLLREK-----HELERRL-SSMEDRDRVD-------------------RDAEEALNQ 1789
               |...::...||     .||:.|| :|..||...|                   .||:..|..
pombe  1321 ISGHIPNSIRKLEKGLSTLSELKERLNASNSDRPSPDIFKDTQAIMNSRKLLSNPNSDAQSGLIS 1385

  Fly  1790 KLRRDL------RKYKALLKDAQTQLERLKADTPGKTLIRQ------LRNQLEDAESARSLAMKA 1842
            .|::.|      .::..|...:.:::..|.:..||....|.      :||..:::.......:..
pombe  1386 SLQKKLYNPESNMEFTGLKPLSPSKISNLPSSQPGSPSKRSGKMEALIRNFDQNSSIPDPFIVNQ 1450

  Fly  1843 RQTAEAELTEVQAMFDESHRARNDAEERANAAHRDRAE----LQAQIEENEEELGELMKKYSATV 1903
            |.:.      :|..|::.:....:|.:.....::|.::    :|:.::||||            :
pombe  1451 RNSV------LQTEFEKINLKLKEATKSGILDNKDLSKFSELIQSLLKENEE------------L 1497

  Fly  1904 KQLNTEQINVSEAEFKLNEMEAE-----RNNLK---EQVAELQHRLDNVENLGDPSMAMMSKRLE 1960
            |.|.|..:...:.......:..:     ||.:|   |:....:..:..:.:..:..:....|.|.
pombe  1498 KNLTTSNLGSDDKMLDFAPLLEDVPNNTRNQIKGFVEKAISSKRAIAKLYSASEEKLFSTEKALR 1562

  Fly  1961 LRTKELESRLE-----------LEQATRARLEV-----QVNRH--KEALEKLQNEVTQSKMREMQ 2007
            ..|||.:..|.           |:..|.::|.:     .:..:  :|..|.||.||...|::|:.
pombe  1563 EITKERDRLLHGLQGPSVPTSPLKAPTASQLIIPNFDGSITNYSGEEETEWLQEEVNIMKIKELT 1627

  Fly  2008 AQDVIKKSQKSL---RDMREEFHAVSS-----REQESLT-RRKDLEKKVEQMESEGAALKNDLRL 2063
            :  .:.|.::.|   :.:.|  ||.||     |.:..|| |.:::|:.....::..|.|:|:|..
pombe  1628 S--TVNKYREQLAMVQSLNE--HAESSLSKAERSKNYLTGRLQEVEELARGFQTTNADLQNELAD 1688

  Fly  2064 ALQRIADLQQAMEEEG----------EEELSESDESLSSVGSISDLEDRLRPVHVK-RSSQQSLN 2117
            |:.:..:.:....|:.          |:.:.:.||  ..|..:.|||:|.:...:. :..|:.||
pombe  1689 AVVKQKEYEVLYVEKSNDYNTLLLQKEKLMKQIDE--FHVIRVQDLEEREKKDQLLFQRYQKELN 1751

  Fly  2118 G 2118
            |
pombe  1752 G 1752

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MhclNP_732109.2 PDZ_canonical 337..426 CDD:483948
COG5022 541..2019 CDD:227355 378/1715 (22%)
MYSc_Myo18 575..1305 CDD:276837 193/762 (25%)
myp2NP_593816.1 COG5022 17..1607 CDD:227355 381/1733 (22%)
CCDC158 <1622..>2070 CDD:464943 32/137 (23%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.