DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mhcl and C46H11.6

DIOPT Version :9

Sequence 1:NP_732109.2 Gene:Mhcl / 41955 FlyBaseID:FBgn0026059 Length:2194 Species:Drosophila melanogaster
Sequence 2:NP_491502.1 Gene:C46H11.6 / 183523 WormBaseID:WBGene00016730 Length:342 Species:Caenorhabditis elegans


Alignment Length:325 Identity:57/325 - (17%)
Similarity:107/325 - (32%) Gaps:116/325 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly  1455 EKELGDQTNKVKNLQETTEKLEMELICAKSDLNGISEDEDAENEDGVGGGVYKLKYERVARE--- 1516
            ||::|...|:|..:.|.:   .:..:...|..||:...:.....:|..|.:.|.:.|.:..|   
 Worm    38 EKDVGKPANEVIRINENS---MVSFLSTNSFYNGLILSDKIVKVNGASGNISKYQTELMKGETCS 99

  Fly  1517 LEFTK-------------------RRLHTQHEHDLEQLVALKK--------HLEMK--------- 1545
            :|.|:                   ||.:|....::|:..|:|.        :::.:         
 Worm   100 VEVTRRKNIIPATRERLKKSGCVLRRDNTCFVIEVEKTSAMKSATVGVTVTYIQKRGIVTRIEPS 164

  Fly  1546 ------------LSDAYEEVVEQRQVVGQWKR-------KAQKMT---------NEMNDLRMLLE 1582
                        :.|..||.:...:....:.|       |.:|:|         ...|.||.|:|
 Worm   165 SLASIFFGRGDLIMDINEESILNAEKNDDFIREKLSGILKGEKVTFLVERPVSVESANTLRHLIE 229

  Fly  1583 E-----------------QNARN---NLLEKKQRKFDAECQSLQDAVRQERQAKERYGREKDVLQ 1627
            .                 :||.|   |:|:|.|.|........:....:|::..::..:|||  .
 Worm   230 SVAPDPDVKMANDAICIGRNASNMHYNVLKKLQPKSILSRDVFKGKNPREKKPGKKLSKEKD--N 292

  Fly  1628 AEKFTLEQTLADTRLDLEFKEEKLASLQRELEEMTFGGGTEEEFAQLRR--SKNETERRAKEQEE 1690
            ..|.:...:.|:...|:                      .|:|...|:.  :|:...|...|:||
 Worm   293 TIKISTATSTANISTDV----------------------AEDEIDNLKNVVTKSHAVRSGDEEEE 335

  Fly  1691  1690
             Worm   336  335

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MhclNP_732109.2 PDZ_signaling 339..426 CDD:238492
MYSc 556..1317 CDD:214580
MYSc_Myo18 575..1305 CDD:276837
GBP_C <1540..1750 CDD:303769 35/218 (16%)
COG1340 1565..1833 CDD:224259 32/164 (20%)
coiled coil 1723..1734 CDD:293879
C46H11.6NP_491502.1 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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