DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Mhcl and ZK849.1

DIOPT Version :9

Sequence 1:NP_732109.2 Gene:Mhcl / 41955 FlyBaseID:FBgn0026059 Length:2194 Species:Drosophila melanogaster
Sequence 2:NP_493476.1 Gene:ZK849.1 / 173288 WormBaseID:WBGene00014100 Length:331 Species:Caenorhabditis elegans


Alignment Length:359 Identity:77/359 - (21%)
Similarity:131/359 - (36%) Gaps:110/359 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly  1799 KALLKDAQTQ-LERLKADTPGKTLIRQLRNQLEDAESARSLAMKARQTAEAELTEVQAMFDESHR 1862
            |||..|.:.. :..|||.:   .:..|:.......|||:.||:|.|:....||.|::|:.:    
 Worm     3 KALASDEKDDWITHLKAIS---NVFTQVCTLSASEESAKKLAIKEREECLQELVELRAIAE---- 60

  Fly  1863 ARNDAEERANAAHRD-RAELQAQIEENEEELGELMKKYSATVKQLNTEQINVSEAEFKLNEMEAE 1926
                       ||.| ..:....:..|.:  |:      ||.:|:             .|:|:.|
 Worm    61 -----------AHDDVIQQFHLLLAANHQ--GD------ATSRQI-------------FNDMKQE 93

  Fly  1927 RNNLKEQVAELQHRLDNVENLGDPSMAMMSKRLELRTKELESRLELEQATRARLEVQVNRHKEAL 1991
            ..:..|::.|  |||                        :|::|.:|:           |..|.:
 Worm    94 VGDNMERIQE--HRL------------------------VEAKLNVEK-----------RRNERM 121

  Fly  1992 EKLQNEVTQSKMREMQAQDVIKKSQKSLRDMREEFHAVSSREQESLTRRKDLEKKVEQMESEGAA 2056
            .|..|||::..:..:.|.....:...::|.|.:.....::.|....::..|      ::|.|...
 Worm   122 AKHINEVSKKSVMHLMATRFYARELAAMRQMMDLVRNAATIESAVKSKLWD------EIEKENRL 180

  Fly  2057 LKNDLRLALQRI--ADLQQAMEEEGEE------------ELSESDESLSSVGSISDLEDRLRPVH 2107
            |:.:....:.||  :||..|..|.|::            |.......|...|..    |:.|||.
 Worm   181 LRLNTLWLINRINSSDLGDAAFENGDDWQSSPRLVILMREHINQGLGLEITGGC----DQFRPVV 241

  Fly  2108 V----KRS----SQQSLNGSIGGGGGSVVSSTRT 2133
            |    |||    .|..:|..|....|:.|::|.|
 Worm   242 VTGKLKRSMADDDQLRVNDRILAIDGTFVTNTTT 275

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MhclNP_732109.2 PDZ_signaling 339..426 CDD:238492
MYSc 556..1317 CDD:214580
MYSc_Myo18 575..1305 CDD:276837
GBP_C <1540..1750 CDD:303769
COG1340 1565..1833 CDD:224259 8/34 (24%)
coiled coil 1723..1734 CDD:293879
ZK849.1NP_493476.1 PDZ_signaling 212..296 CDD:238492 18/68 (26%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.