DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GATAe and Gata3

DIOPT Version :9

Sequence 1:NP_650516.2 Gene:GATAe / 41945 FlyBaseID:FBgn0038391 Length:746 Species:Drosophila melanogaster
Sequence 2:NP_579827.1 Gene:Gata3 / 85471 RGDID:621250 Length:444 Species:Rattus norvegicus


Alignment Length:521 Identity:139/521 - (26%)
Similarity:195/521 - (37%) Gaps:167/521 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   255 VISSEAEALQHHHQQ--QQQHQQQQHQQQHHQHQAAA----------AASAAAQTVHIATSSHGG 307
            |.:.:...:.|||..  ..||....|....|.:...|          ..:...|..|: .|.:|.
  Rat     3 VTTDQPRWVSHHHPAVLNGQHPDTHHPGLGHSYMDPAQYPLTEEVDVLFNIDGQGNHV-PSYYGN 66

  Fly   308 TVRFVTEDVRFTTAGPETSASNMYYDVPVVDGSVHANESKTYADLGNAYAPFPPSSSFSSNSYAA 372
            :||...:  |:    |.|...:.....|::.||:      .:.|.|.|.:....:|.::.:.::.
  Rat    67 SVRATVQ--RY----PPTHHGSQVCRPPLLHGSL------PWLDGGKALSSHHTASPWNLSPFSK 119

  Fly   373 T-LQQGN----TIYSVPGTGQFLAKSESGLNQTGLLRQTGPATFQTISFEGGNGIEPLWASPAPP 432
            | :..|:    ::|. |.:...||...|..:..     |.|.|            .|...||.|.
  Rat   120 TSIHHGSPGPLSVYP-PASSSSLAAGHSSPHLF-----TFPPT------------PPKDVSPDPS 166

  Fly   433 ------------------EYQ-----SVQFSNFH----------------------PQVIDEYGS 452
                              :||     |::....|                      |..:.||.|
  Rat   167 LSTPGSAGSARQDEKECLKYQVQLPDSMKLETSHSRGSMTTLGGASSSAHHPITTYPPYVPEYSS 231

  Fly   453 GNMSTSHWPPASSIGQYDGSLVTASSTSSP-----NHELKCENCHG---PFLRKG--SEYFCPNC 507
            |     .:||:|.:|   ||.......|.|     ....:|.||..   |..|:.  ..|.|..|
  Rat   232 G-----LFPPSSLLG---GSPTGFGCKSRPKARSSTEGRECVNCGATSTPLWRRDGTGHYLCNAC 288

  Fly   508 PAFMRM----APRITQRQAKPK--AAAAPNNRRNGVTCANCQTNSTTLWRRNNEGNPVCNACGLY 566
            ..:.:|    .|.|     |||  .:||   ||.|.:||||||.:|||||||..|:|||||||||
  Rat   289 GLYHKMNGQNRPLI-----KPKRRLSAA---RRAGTSCANCQTTTTTLWRRNANGDPVCNACGLY 345

  Fly   567 YKLHNMNRPLSMKKEGIQKRKRK--PKNNGGAPMHRAPLPSMSQGVNLMANSPLYPSQVPVSMLN 629
            |||||:||||:|||||||.|.||  .|:.....:|.|           :.:.|...|..|.: |:
  Rat   346 YKLHNINRPLTMKKEGIQTRNRKMSSKSKKCKKVHDA-----------LEDFPKSSSFNPAA-LS 398

  Fly   630 SQLNSQQNSSPELHD--MSTTGQAGGQRVVSISLNATAPPTPDGTLNMSARHHVTGESHSPYSQQ 692
            ..::|..:.||..|.  |.||                  |||        .|..:|.|..|:...
  Rat   399 RHMSSLSHISPFSHSSHMLTT------------------PTP--------MHPPSGLSFGPHHPS 437

  Fly   693 S 693
            |
  Rat   438 S 438

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GATAeNP_650516.2 ZnF_GATA 534..583 CDD:214648 38/48 (79%)
ZnF_GATA 538..589 CDD:238123 40/50 (80%)
Gata3NP_579827.1 ZnF_GATA 263..313 CDD:238123 16/57 (28%)
ZnF_GATA 317..367 CDD:238123 40/49 (82%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5641
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000130
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10071
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
54.910

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