DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GATAe and gata6

DIOPT Version :9

Sequence 1:NP_650516.2 Gene:GATAe / 41945 FlyBaseID:FBgn0038391 Length:746 Species:Drosophila melanogaster
Sequence 2:NP_001313293.1 Gene:gata6 / 58076 ZFINID:ZDB-GENE-000622-1 Length:501 Species:Danio rerio


Alignment Length:608 Identity:162/608 - (26%)
Similarity:240/608 - (39%) Gaps:187/608 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   142 ASNASSGS-ASDSHIEY-QRSAHQSPGATHYVQMAPRNAEVTEQVGAAAGAPPGTI--FAYP--I 200
            :|::|.|| |..|::.. :|...:||..||...:..|.||         |.|..:.  |.:|  .
Zfish    16 SSSSSPGSPAEQSYLNTDRRDRLRSPAPTHLDPVGSRRAE---------GRPLHSYVHFGHPNNA 71

  Fly   201 ICNGDDVAAIKIETLEKGEATGESQQQQQQLQQHQHQQQQQCPTPNGASYGETIVISSEAEALQH 265
            :.:.|||...                  ..|.|                 |..::||.       
Zfish    72 LPSSDDVTLF------------------TDLDQ-----------------GNKLIISG------- 94

  Fly   266 HHQQQQQHQQQQHQ-----QQHHQHQAAAAASAAAQTVHIATSSHGGTVRFVTEDVRFTTAGPET 325
                  .|.::.|:     .....:|..|.|:|.:|..:..|.|.|......|..|...|:...|
Zfish    95 ------GHPRETHKGGLIVDPTDMYQTLAIAAAQSQAGYNDTPSAGYMHSNPTSPVYVPTSRVGT 153

  Fly   326 SASNMYYDVPVVDG------SVH------ANESKTYADLGNA-------YAPFPPSSSFSSNSYA 371
            ...|:.|..|.|..      |.|      |.||.:|: .|:.       |:|.||.::.:|...:
Zfish   154 MIPNLSYLPPGVSTQPSHAVSSHSVWSQPAPESPSYS-TGSPHTSNRFHYSPSPPMNNGTSRDTS 217

  Fly   372 ATLQQGNTIYSVPGTGQFLAKSESGLNQTGLLRQTGPATFQTISFEGGNGIEPLWASPAPPEYQS 436
            .|     |..:|....|:|::..||                            .:.||.|| |.:
Zfish   218 YT-----TPLNVNSRDQYLSRPISG----------------------------SYPSPYPP-YVT 248

  Fly   437 VQFSNFHPQVIDEYGSGNMSTSHWPPASSIGQYDGSLVTASSTSS-------PNHEL-------- 486
            .|.|..              .:.||    .|.::.|::.:..:.|       ||.:|        
Zfish   249 PQLSQL--------------PAAWP----AGPFENSMLHSLQSRSAPLAIRGPNGDLLEEMVESR 295

  Fly   487 KCENCHG---PFLRK-GSEYF-CPNCPAFMRMAPRITQRQAKPKAAAAPNNRRNGVTCANCQTNS 546
            :|.||..   |..|: |:.:| |..|..:.:| ..:::...||:...: ::||.|::||||||::
Zfish   296 ECVNCGSMSTPLWRRDGTGHFLCNACGLYSKM-NGLSRPLIKPQKRMS-SSRRIGLSCANCQTST 358

  Fly   547 TTLWRRNNEGNPVCNACGLYYKLHNMNRPLSMKKEGIQKRKRKPKN----NGGAPMHRAPL-PSM 606
            |||||||.||.|||||||||.|||.:.|||:|||||||.||||||:    .|.:.....|: |:.
Zfish   359 TTLWRRNAEGEPVCNACGLYTKLHGVPRPLAMKKEGIQTRKRKPKSLSKVKGSSGSSSVPMTPTS 423

  Fly   607 SQGVN---LMANSPLYPSQVPVSMLNSQLNSQQNSSPELHDMSTTG---QAGGQRVVSISLNATA 665
            |...|   ...||| ..:||||:.:||.....|...|     .|||   :..||..:..::..|:
Zfish   424 SSSSNSEECTKNSP-SSTQVPVTSVNSSTLVGQVDVP-----GTTGSMVKFPGQESLYTNVGLTS 482

  Fly   666 PPTPDGTLNMSARHHVTGESHSP 688
                    :......|.|:|..|
Zfish   483 --------SADVASSVRGDSWCP 497

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GATAeNP_650516.2 ZnF_GATA 534..583 CDD:214648 36/48 (75%)
ZnF_GATA 538..589 CDD:238123 39/50 (78%)
gata6NP_001313293.1 GATA-N 112..285 CDD:283099 48/225 (21%)
ZnF_GATA 295..337 CDD:214648 10/42 (24%)
ZnF_GATA 296..340 CDD:238123 12/44 (27%)
ZnF_GATA 346..395 CDD:214648 36/48 (75%)
ZnF_GATA 350..401 CDD:238123 39/50 (78%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000130
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.910

Return to query results.
Submit another query.