DRSC/TRiP Functional Genomics Resources

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Protein Alignment GATAe and gata1b

DIOPT Version :9

Sequence 1:NP_650516.2 Gene:GATAe / 41945 FlyBaseID:FBgn0038391 Length:746 Species:Drosophila melanogaster
Sequence 2:XP_021334219.1 Gene:gata1b / 564960 ZFINID:ZDB-GENE-081104-43 Length:372 Species:Danio rerio


Alignment Length:404 Identity:112/404 - (27%)
Similarity:163/404 - (40%) Gaps:96/404 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   341 VHANESKTYADLGNAYAPFPPSSSFSSNSYA---ATLQQGNT--IYSVPGTGQF-LAKSESGLNQ 399
            :|..|:..:......::..|  |.|||..::   |..|....  |||.|..|.. ..:..||.:.
Zfish    27 LHGEEASIFPCTDADHSGLP--SLFSSPVHSRPTAAFQHSPVYPIYSSPFLGNLSWLEGSSGSSL 89

  Fly   400 TGLLRQTGPATFQTISFEGGNGIEPLWASPAPPEYQSVQFSNFHP----------QVIDEYGSGN 454
            |... .:.|:::.:.:|...:......:|..|.:.:||:.....|          .:...|...:
Zfish    90 TNYF-PSSPSSWHSSAFSKASSSSFSSSSARPEQKESVKGERSSPPGGGLFPLNSSLSGVYPHSH 153

  Fly   455 MSTSHWPPASSIGQ-YDGSLVTASST----------SSPNHELKCENCHG---PFLRKG--SEYF 503
            .:.:|:.|.....| |..||:.|.:|          .||....:|.||..   |..|:.  ..|.
Zfish   154 STKTHYSPYGGHTQDYSSSLLYAPATFTPKLCSKMNFSPLDARECVNCGATATPLWRRDGTGHYL 218

  Fly   504 CPNCPAFMRM----APRITQRQAKPKAAAAPNNRRNGVTCANCQTNSTTLWRRNNEGNPVCNACG 564
            |..|..:.:|    .|.|     :||..... ::|.|..||||||::|||||||:.|.|||||||
Zfish   219 CNACGLYHKMNGQNRPLI-----RPKKRPVV-SKRIGTQCANCQTSTTTLWRRNSSGEPVCNACG 277

  Fly   565 LYYKLHNMNRPLSMKKEGIQKRKRK--PKNNGGAPMHRAPLPSMSQGVNLMANSPLYPSQVPVSM 627
            ||:||||:||||:|||||||.|.||  .||..|     ....:|.:  ||..:.|..|:      
Zfish   278 LYFKLHNVNRPLAMKKEGIQTRNRKVSSKNRKG-----KKFSTMEE--NLYCDFPKTPA------ 329

  Fly   628 LNSQLNSQQNSSPELHDMSTTGQAGGQRVVSISLNATAPPTPDGTLNMSARHHVTGESHSPYSQQ 692
            .:...:....|...|...|.:||:                                .::.||...
Zfish   330 CDQHFDMYSQSPAALGVYSHSGQS--------------------------------TAYLPYPYH 362

  Fly   693 STPQSQSPHLPGTV 706
            |:|..    ||.||
Zfish   363 SSPAV----LPSTV 372

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GATAeNP_650516.2 ZnF_GATA 534..583 CDD:214648 37/48 (77%)
ZnF_GATA 538..589 CDD:238123 39/50 (78%)
gata1bXP_021334219.1 ZnF_GATA 197..243 CDD:238123 13/50 (26%)
ZnF_GATA 251..302 CDD:238123 39/50 (78%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5641
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000130
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10071
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.910

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