DRSC/TRiP Functional Genomics Resources

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Protein Alignment GATAe and Gata4

DIOPT Version :9

Sequence 1:NP_650516.2 Gene:GATAe / 41945 FlyBaseID:FBgn0038391 Length:746 Species:Drosophila melanogaster
Sequence 2:XP_006252251.1 Gene:Gata4 / 54254 RGDID:2665 Length:441 Species:Rattus norvegicus


Alignment Length:416 Identity:114/416 - (27%)
Similarity:161/416 - (38%) Gaps:135/416 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   290 AASAAAQTVHIAT-----------------------SSHGGTVRFVTEDVRFTTAGPETSASNMY 331
            :|.||:..|::.|                       ::.||:          :.|||..:.....
  Rat    29 SAGAASSPVYVPTPRVPSSVLGLSYLQGGGSGAASGATSGGS----------SGAGPSGAGPGTQ 83

  Fly   332 YDVPVVDGSVHANESKTYADLGNAYAPFPPSSSFSSNSYAATLQQGNTIYSVPGTGQFLA----- 391
            ...|        ..|:..|: |.||.|.|.|..|                |.|||...||     
  Rat    84 QGSP--------GWSQAGAE-GAAYTPPPVSPRF----------------SFPGTTGSLAAAAAA 123

  Fly   392 ---------KSESGLNQTGLLRQTGPATFQTISFEGGNGIEPLWASPAPPEYQSVQFSNFHPQVI 447
                     .|..|....||   .|...:....|.|.      ::||             :|..:
  Rat   124 AAAREAAAYSSSGGAAGAGL---AGREQYGRPGFAGS------YSSP-------------YPAYM 166

  Fly   448 DEYGSGNMSTSHW--PPASSIGQYDGSLV-----TASSTSSPN---------HELKCENCHG--- 493
            .:.|:.      |  ..|:|.|.:|..::     .|:....||         ...:|.||..   
  Rat   167 ADVGAS------WAAAAAASAGPFDSPVLHSLPGRANPARHPNLVDMFDDFSEGRECVNCGAMST 225

  Fly   494 PFLRKG--SEYFCPNCPAFMRMAPRITQRQAKPKAAAAPNNRRNGVTCANCQTNSTTLWRRNNEG 556
            |..|:.  ..|.|..|..:.:| ..|.:...||:...:. :||.|::||||||.:|||||||.||
  Rat   226 PLWRRDGTGHYLCNACGLYHKM-NGINRPLIKPQRRLSA-SRRVGLSCANCQTTTTTLWRRNAEG 288

  Fly   557 NPVCNACGLYYKLHNMNRPLSMKKEGIQKRKRKPKNNGGAPMHRAPLPSMSQGVNLMANSPLYPS 621
            .|||||||||.|||.:.|||:|:|||||.|||||||     ::::..|:...|.:|       |.
  Rat   289 EPVCNACGLYMKLHGVPRPLAMRKEGIQTRKRKPKN-----LNKSKTPAGPPGESL-------PP 341

  Fly   622 QVPVSMLNSQLNSQQNSSPELHDMST 647
            ....|..:|...|..:||.|:..:.|
  Rat   342 SSGASSNSSNATSSSSSSEEMRPIKT 367

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GATAeNP_650516.2 ZnF_GATA 534..583 CDD:214648 35/48 (73%)
ZnF_GATA 538..589 CDD:238123 38/50 (76%)
Gata4XP_006252251.1 GATA-N 1..204 CDD:283099 44/237 (19%)
ZnF_GATA 212..257 CDD:214648 10/45 (22%)
ZnF_GATA 216..266 CDD:238123 12/51 (24%)
ZnF_GATA 268..315 CDD:214648 34/46 (74%)
ZnF_GATA 270..321 CDD:238123 38/50 (76%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166341918
Domainoid 1 1.000 50 1.000 Domainoid score I11378
eggNOG 1 0.900 - - E1_COG5641
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000130
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
65.700

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