DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GATAe and pnr

DIOPT Version :9

Sequence 1:NP_650516.2 Gene:GATAe / 41945 FlyBaseID:FBgn0038391 Length:746 Species:Drosophila melanogaster
Sequence 2:NP_476685.1 Gene:pnr / 44849 FlyBaseID:FBgn0003117 Length:540 Species:Drosophila melanogaster


Alignment Length:545 Identity:136/545 - (24%)
Similarity:181/545 - (33%) Gaps:212/545 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly   270 QQQHQQQQHQQQHHQH----QAAAAASAAAQTVHIATSS--HGGTVRFVTEDVRFTTAGPETSA- 327
            ||..:...|....:|:    .|:|:.||:|...|:|...  |...|...|:   ...||...|| 
  Fly    14 QQSTRDYPHFSGDYQNVTLSAASASTSASASATHVAAVKMYHSSAVAAYTD---LAAAGSAASAG 75

  Fly   328 --------------------SNMYYD-VPVVDGSVHANESKTYADLGNAYAPFPPSSSFSSNSYA 371
                                ||..|: |....||..|..:.|....|:|:|.|            
  Fly    76 VGVGVSGYHQQAVNAPVYVPSNRQYNHVAAHFGSAAAQNAWTTEGFGSAHAQF------------ 128

  Fly   372 ATLQQGNTIYSVPGTGQFLAKSESGLNQTGLLRQTGPATFQTISFEGGNGIEPLWASPAPPEYQS 436
                     || |.....:....|..:.:|..|                      :||    |:|
  Fly   129 ---------YS-PNAAVMMGSWRSAYDPSGFQR----------------------SSP----YES 157

  Fly   437 VQFSNFHPQVIDEYGSGNMSTSHWPPASSIGQYDGSLVTASSTSSPNHELKCENCHG---PFLRK 498
            ..  :|      ::|.|.                                :|.||..   |..|:
  Fly   158 AM--DF------QFGEGR--------------------------------ECVNCGAISTPLWRR 182

  Fly   499 G--SEYFCPNCPAFMRM----APRITQRQAKP--KAAAAPNNRRNGVTCANCQTNSTTLWRRNNE 555
            .  ..|.|..|..:.:|    .|.|     ||  :..:|...||.|:.|.||.|.:||||||||:
  Fly   183 DGTGHYLCNACGLYHKMNGMNRPLI-----KPSKRLVSATATRRMGLCCTNCGTRTTTLWRRNND 242

  Fly   556 GNPVCNACGLYYKLHNMNRPLSMKKEGIQKRKRKPKNNGG------------------------- 595
            |.|||||||||||||.:||||:|:|:|||.||||||..|.                         
  Fly   243 GEPVCNACGLYYKLHGVNRPLAMRKDGIQTRKRKPKKTGSGSAVGAGTGSGTGSTLEAIKECKEE 307

  Fly   596 --------------APMHRAPLPSMSQGVNLMANSPLYPSQVPVSMLNSQLNSQQNSSPE----- 641
                          :.:|.......|....||.:......|........|...||..|..     
  Fly   308 HDLKPSLSLERHSLSKLHTDMKSGTSSSSTLMGHHSAQQQQQQQQQQQQQQQQQQQQSAHQQCFP 372

  Fly   642 LHDMSTTGQAGGQRVVSISLNATAPPTPDGTLNMSARH-HVT-------------GESHSPYSQQ 692
            |:..:||.|...|...|::       :..|..::|||| |..             |.|.|.|:..
  Fly   373 LYGQTTTQQQHQQHGHSMT-------SSSGQAHLSARHLHGAAGTQLYTPGSSSGGGSASAYTSH 430

  Fly   693 S--TPQ----SQSP------HLPGT 705
            |  ||.    :.||      ||.||
  Fly   431 SAETPALSNGTPSPHYQHHHHLGGT 455

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GATAeNP_650516.2 ZnF_GATA 534..583 CDD:214648 34/48 (71%)
ZnF_GATA 538..589 CDD:238123 37/50 (74%)
pnrNP_476685.1 ZnF_GATA 164..212 CDD:214648 15/84 (18%)
ZnF_GATA 168..212 CDD:238123 13/48 (27%)
ZnF_GATA 223..270 CDD:214648 33/46 (72%)
ZnF_GATA 226..276 CDD:238123 37/49 (76%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45438452
Domainoid 1 1.000 54 1.000 Domainoid score I2758
eggNOG 1 0.900 - - E1_COG5641
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S2600
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000130
OrthoInspector 1 1.000 - - mtm9213
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR10071
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
87.790

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